Hi Ellankavi, assuming you are using the 2014.10.02 release, you should be able to add a tissue mask just by CTRL-clicking on it and the fiber bundle. When both are selected the "Tissue Mask" label should change to the name of the image being used as a tissue mask. Please note, that it should be a binary image mask (they are denoted by a special icon in the datamanager, where an image has a 5 by 5 grey value matrix icon, the binary masks icon contains red voxels symbolizing a segmentation).
If your tissue mask is recognized as a regular image you can force it to be treated as a segmentation by selecting it in the Properties View and checking the "binary" property. Alternatively you can use the thresholding option of the Basicimageprocessing view. Best, Caspar Von: Ramasamy, Ellankavi [mailto:ellankavi.ramas...@ipa.fraunhofer.de] Gesendet: Donnerstag, 8. September 2016 12:28 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] Fiberfox tissue mask Hello, I'm new to MITK and interested in creating a DW-MRI phantom using the Fiberfox module. I'm able to create the fiber bundle but I'm unable to add a tissue mask to the data. How can I add a tissue mask to the fiber bundle? Thanks Warm regards, Ellankavi
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