Hello Mr.Goch,
Thanks for the reply. Like how the Dicom reader is used in workbench to
load the dicom images, how to use the code of the dicom reader to load the
dicom images in my custom made code.?
My observations is that, i am using mitk::IOUtil::Load(argv[1], *ds);. It
loads all the things in the data storage. That is, its loading multiple
data sets of the dicom images even if the selected image is of one dataset.
My requirement is that : Just like how the work bench gives me an option to
choose a dicom reader to load dicom image, I want to implement something
like that in my custom code.
As of now i am directly loading the dicom images from data storage, and it
is loading data from multiple dicom datasets instead of one dataset. I want
the data from only single dataset.
How do i proceed further with this? please advice.
Kind Regards
Varun Varadarajan
Mit freundlichen Grüßen,
Varun Varadarajan
--------------------------------
Mr. Varun Varadarajan
Werkstudent
Tel: +49 6221 3543445
Mob: +49-17657977029 <%2B49%20163%203349042>
E-Mail: varun.varadara...@inova-de.eu
Web: www.inova-de.eu
Inova DE GmbH
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On 26 October 2016 at 10:42, Goch, Caspar Jonas <c.g...@dkfz-heidelberg.de>
wrote:
> Hi Varun,
>
>
>
> as I said. mitk::IOUtil::Load(argv[1],*ds); does load dicom images If the
> dicom modules are build (which they are in your case, because you can open
> it in the datamanager). Presumably the following command will show
> something:
>
>
>
> <YourSuperbuildDirectory>\MITK-build\bin\MitkStep1_release.bat
> <YourSuperbuildDirectory>\MITK-Data\DICOMReader\CR-
> MONO1-10-chest-spacing-pixelspacing.dcm
>
>
>
> So you are using the mitk dicom reader. However if your own data does not
> load, then because the default dicom reader configuration (of the three
> configurations) does not know how to handle whatever is written in your
> dicom data’s tag 0028,0005, which happens to be “ImageDimensions”.
>
>
>
> Check your data via dcmdump (or another dicom utility of your choice) to
> see what that tag contains in contrast to some of the test data we provide.
> Then check whether you can reproduce the error using the Workbench to see
> which configurations can handle it and which cannot.
>
>
>
> For code examples take a look at:
>
> FileReaderSelector::FileReaderSelector(const std::string &path) : m_Data(
> new Impl)
>
> For getting a reader for your path.
>
>
>
> std::vector<mitk::BaseData::Pointer> baseData = reader->Read();
>
> gets you the actual data from the reader, check
>
> std::string IOUtil::Load(std::vector<LoadInfo> &loadInfos,
>
> DataStorage::SetOfObjects *nodeResult,
>
> DataStorage *ds,
>
> ReaderOptionsFunctorBase *optionsCallback)
>
> For an example of how it is used in the application. You can also set a
> breakpoint there to see what happens differently for the MITK Workbench
> read and the tutorial step read.
>
>
>
> Best,
>
> Caspar
>
>
>
> *Von:* Varun Varadarajan [mailto:varun.varadara...@inova-de.eu]
> *Gesendet:* Dienstag, 25. Oktober 2016 16:12
>
> *An:* Goch, Caspar Jonas
> *Cc:* mitk-users
> *Betreff:* Re: [mitk-users] To load dicom images
>
>
>
> Hello Mr.Goch,
>
>
>
> As said earlier, I selected the MITK Dicom Reader from the dropdown. But
> this is in the mitk workbench. How do i use the same in my code. Which
> library or mitk header i need to include to load dicom images. MITK
> documentation is too huge that i get confused where to begin at. I do not
> want to change the entire thing. I want to use MITK as part of my code.
>
>
>
> Kindly help me with how to load the dicom image using MITK libraries and
> functions.
>
>
>
>
>
>
> Mit freundlichen Grüßen,
> Varun Varadarajan
> --------------------------------
>
> Mr. Varun Varadarajan
> Werkstudent
>
> Tel: +49 6221 3543445
> Mob: +49-17657977029 <%2B49%20163%203349042>
> E-Mail: varun.varadara...@inova-de.eu
> Web: www.inova-de.eu
>
> Inova DE GmbH
> Sitz: Kaiserstraße 64, 69115 Heidelberg, Germany
>
>
>
> Amtsregister Mannheim: HRB 722938, USt-IdNr.: DE 301814751 Steuernummer:
> 32494/63607 Geschäftsführer: Varun Varadarajan
>
>
>
> Diese E-Mail kann Betriebs- oder Geschäftsgeheimnisse, dem
> Anwaltsgeheimnis unterliegende oder sonstige vertrauliche Informationen
> enthalten. Sollten Sie diese E-Mail irrtümlich erhalten haben, ist Ihnen
> eine Kenntnisnahme des Inhalts, eine Vervielfältigung oder Weitergabe der
> E-Mail ausdrücklich untersagt. Bitte benachrichtigen Sie uns und vernichten
> Sie die empfangene E-Mail. Vielen Dank!
> This message contains confidential information and is intended only for
> the individual named. If you are not the named addressee you should not
> disseminate, distribute or copy this e-mail. Please notify the sender
> immediately and delete this e-mail from your system. Thank you!
>
> Please think twice before printing this e-mail: save paper, toner and the
> environment.
>
>
>
> On 21 October 2016 at 12:17, Goch, Caspar Jonas <c.g...@dkfz-heidelberg.de>
> wrote:
>
> Hi Varun,
>
>
>
> Dicom handling in MITK is somewhat different from other image formats.
> When you invoke
>
> mitk::IOUtil::Load(argv[1],*ds);
>
> it probably selects the classic dicom reader by default (there are
> currently three reader configuriations). If you load those image with the
> workbench via drag and drop (of one of the .dcms), which reader did you
> select (there should be a popup). Test all three whether you receive the
> warning there as well.
>
>
>
> Best,
>
> Caspar
>
>
>
> *Von:* Varun Varadarajan [mailto:varun.varadara...@inova-de.eu]
> *Gesendet:* Freitag, 14. Oktober 2016 11:42
> *An:* Goch, Caspar Jonas
> *Cc:* mitk-users
> *Betreff:* Re: [mitk-users] To load dicom images
>
>
>
> Hello Mr.Goch,
>
>
>
> I will add the users list here on.
>
>
>
>
>
> Yes in the MITK workbench it works fine and the .dcm image is loaded in
> all the 4 views. But it does not work in case of the tutorial program Step
> 1. And is the program limited to load onlzý .nrrd and .vtk images?
>
>
>
> Does this warning signify anything?
>
>
>
> *"sorry cant read attribute <wrong VR>: <0028,0005> "*
>
>
>
> *Because i do not get this warning while loading .nrrd and .vtk images.*
>
>
>
> Any advise on this?
>
>
>
> Kind Regards
>
> Varun
>
>
> Mit freundlichen Grüßen,
> Varun Varadarajan
> --------------------------------
>
> Mr. Varun Varadarajan
> Werkstudent
>
> Tel: +49 6221 3543445
> Mob: +49-17657977029 <%2B49%20163%203349042>
> E-Mail: varun.varadara...@inova-de.eu
> Web: www.inova-de.eu
>
> Inova DE GmbH
> Sitz: Kaiserstraße 64, 69115 Heidelberg, Germany
>
>
>
> Amtsregister Mannheim: HRB 722938, USt-IdNr.: DE 301814751 Steuernummer:
> 32494/63607 Geschäftsführer: Varun Varadarajan
>
>
>
> Diese E-Mail kann Betriebs- oder Geschäftsgeheimnisse, dem
> Anwaltsgeheimnis unterliegende oder sonstige vertrauliche Informationen
> enthalten. Sollten Sie diese E-Mail irrtümlich erhalten haben, ist Ihnen
> eine Kenntnisnahme des Inhalts, eine Vervielfältigung oder Weitergabe der
> E-Mail ausdrücklich untersagt. Bitte benachrichtigen Sie uns und vernichten
> Sie die empfangene E-Mail. Vielen Dank!
> This message contains confidential information and is intended only for
> the individual named. If you are not the named addressee you should not
> disseminate, distribute or copy this e-mail. Please notify the sender
> immediately and delete this e-mail from your system. Thank you!
>
> Please think twice before printing this e-mail: save paper, toner and the
> environment.
>
>
>
> On 14 October 2016 at 11:36, Goch, Caspar Jonas <c.g...@dkfz-heidelberg.de>
> wrote:
>
> Hi Varun,
>
>
>
> have you tried loading the images using the dicom browser of the MITK
> workbench? Did it work?
>
>
>
> Best,
>
> Caspar
>
>
>
> *Von:* Varun Varadarajan [mailto:varun.varadara...@inova-de.eu]
> *Gesendet:* Freitag, 14. Oktober 2016 11:01
> *An:* mitk-users
> *Betreff:* [mitk-users] To load dicom images
>
>
>
> Hello All,
>
>
>
> I am new to MITK and i was trying the MITK tutorials. I want to load the
> DICOM images instead of .nrrd or .vtk.
>
>
>
> As i see "mitk::IOUtil::Load(argv[1], *ds);" is the line which loads the
> images. If i want to load a dicom image(*.dcm) , what am i supposed to do?
>
>
>
> I give the dicom image location path in the command arguments, but a blank
> screen is displayed in the output window and i get a lot of warnings saying
> :
>
>
>
> *"sorry cant read attribute <wrong VR>: <0028,0005> "*
>
>
>
> What might be the reason?
>
>
>
> Please Help
>
>
>
>
> Mit freundlichen Grüßen,
> Varun Varadarajan
> --------------------------------
>
> Mr. Varun Varadarajan
> Werkstudent
>
> Tel: +49 6221 3543445
> Mob: +49-17657977029 <%2B49%20163%203349042>
> E-Mail: varun.varadara...@inova-de.eu
> Web: www.inova-de.eu
>
> Inova DE GmbH
> Sitz: Kaiserstraße 64, 69115 Heidelberg, Germany
>
>
>
> Amtsregister Mannheim: HRB 722938, USt-IdNr.: DE 301814751 Steuernummer:
> 32494/63607 Geschäftsführer: Varun Varadarajan
>
>
>
> Diese E-Mail kann Betriebs- oder Geschäftsgeheimnisse, dem
> Anwaltsgeheimnis unterliegende oder sonstige vertrauliche Informationen
> enthalten. Sollten Sie diese E-Mail irrtümlich erhalten haben, ist Ihnen
> eine Kenntnisnahme des Inhalts, eine Vervielfältigung oder Weitergabe der
> E-Mail ausdrücklich untersagt. Bitte benachrichtigen Sie uns und vernichten
> Sie die empfangene E-Mail. Vielen Dank!
> This message contains confidential information and is intended only for
> the individual named. If you are not the named addressee you should not
> disseminate, distribute or copy this e-mail. Please notify the sender
> immediately and delete this e-mail from your system. Thank you!
>
> Please think twice before printing this e-mail: save paper, toner and the
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>
>
>
>
>
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