Hi Lidia,
MITK internally uses a different gradient convention than the HCP. We are
planning on fixing it, but currently you have to flip the gradient vectors
manually in the Y-dimension (y --> -y) before processing the HCP datasets in
MITK.
If you are using the current master of MITK, you can use the “Gradients”-Tab of
the Preprocessing view to flip the gradient directions. Otherwise you have to
do it manually in the .bvecs file.
Did that solve your problem?
Best,
Peter
Von: Лидия Коноплева [mailto:lidia.konopl...@gmail.com]
Gesendet: Montag, 27. März 2017 10:33
An: mitk-users@lists.sourceforge.net
Betreff: [mitk-users] Qball multishell reconstruction
Hi!
I'm trying to import Human Connectome Project multishell Data to MITK as fsl
files. But when I do Qball multi shell reconstruction of data, there are some
mistakes in FODs orientation. Gradients directions are in fsl measurement
frame. Could you help me with this problem, please?
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