Dear Jieren, which version of MITK Diffusion are you using? The current version 2017.07 automatically outputs nifti files: http://mitk.org/wiki/DiffusionImaging#Downloads With the old version you should be able to load the .dwi file in the GUI and save it as .nii, but I highly recommend updating to 2017.07.
As for your second question, I am not sure what you mean by "QBall generating pipeline". Are your referring to the Fiberfox simulation? The mask for the generated file is the same as the mask for the simulation. Best regards, Peter ________________________________________ Von: jierenxu <jierenx...@gmail.com> Gesendet: Montag, 25. September 2017 02:31 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] Generating the Dear developers, I've been trying to regenerate the ISMRM 2015 challenge data by the files provided on the challenge website using Fiberfox. And I went into the following questions, 1. The output DWI data format is .dwi, however, the given challenge data is several .nii files and .bvecs and .bvals. Could I use MITK transform between those two data types? If not, how could I retrieve the challenge data in .nii type? 2. There is a mask provided in the generating files. Could I have a mask.nii file of the generated .dwi data as well? Cause I notice that there are options for a tissue mask for the QBall generating pipeline. Thank you! Best regards, Jieren Xu Duke University -- Sent from: http://mitk-users.1123740.n5.nabble.com/ ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
