You can save the fibers int vtk or trk format. Both store the point
coordinates. You can find some more details about the file formats supported by
MITK Diffusion here:
http://docs.mitk.org/nightly/QmitkDiffusionImagingDataImportPage.html
I don't know if Matlab is able to read these formats. You can definitely read
the files using python (dipy), if that helps.
________________________________
Von: Tanya <tanya.gloz...@gmail.com>
Gesendet: Freitag, 6. Juli 2018 22:41
An: Neher, Peter
Cc: mitk-users@lists.sourceforge.net
Betreff: Re: [mitk-users] generating synthetic fiber bundles with FiberFox
thanks Peter!
Now that I'm able to generate the fiber bundles, how can I export them for
further processing in Matlab? I only need the coordinates for fiber nodes, not
volume information. Is there any documentation on this?
On Thu, Jul 5, 2018 at 11:18 PM Neher, Peter
<p.ne...@dkfz-heidelberg.de<mailto:p.ne...@dkfz-heidelberg.de>> wrote:
Dear Tanya,
looks kike an outdated documentation. The button is labeled "Start Simulation".
Let me know if you have further questions.
Peter
---------------------------------------------------------------------------------------------------
Dr. Peter F. Neher
Division of Medical Image Computing
Scientist
German Cancer Research Center (DKFZ)
Foundation under Public Law
Im Neuenheimer Feld 280
69120 Heidelberg
Germany
phone: +49 6221 42-2330
fax: +49 6221 42-2345
p.ne...@dkfz.de
www.dkfz.de<http://www.dkfz.de/>
Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta
VAT-ID No.: DE143293537
________________________________
Von: Tanya <tanya.gloz...@gmail.com<mailto:tanya.gloz...@gmail.com>>
Gesendet: Freitag, 6. Juli 2018 00:08
An: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>
Betreff: [mitk-users] generating synthetic fiber bundles with FiberFox
Dear MITK users!
I'm new to MITK and installed the 2017.07 release using a windows installer.
I would like to use Fiberfox to generate synthetic fiber bundles (i.e. without
an input image volume).
The instructions to generate fibers this way say "if you don't have such an
image available switch to the "Signal Generation" tab, define the size and
spacing of the desired image ang click "Generate Image"."
I don't see the "Generate Image" button anywhere though. What step am i missing?
Is there an updated tutorial on how to generate synthetic fiber bundles?
Thanks!
Tanya
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