Hi Nil,
I found a workaround by discarding the custom shaders and simply using two VTK clipping planes. This makes the fibers visible in 2D again. Unfortunately it does not include the nice fading effect of the fibers with growing distance from the view plane. For this I have to fix the actual shader issue, which is a real pain because the shaders are impossible to debug. Peter ________________________________ Von: Nil Goyette <nil.goye...@imeka.ca> Gesendet: Donnerstag, 28. Oktober 2021 15:19 An: Neher, Peter Cc: mitk-users@lists.sourceforge.net Betreff: Re: [mitk-users] 2D FiberBundleMapper Hi Peter, Excellent news! I subscribed to that task. I can cherry-pick your commits and test if you need it. It may not be a priority right now for my boss, but I kinda want to do a 2021.02 release :) The 2D fibers mapper is the only missing part. Thanks. Le jeu. 28 oct. 2021, à 05 h 47, Neher, Peter <p.ne...@dkfz-heidelberg.de<mailto:p.ne...@dkfz-heidelberg.de>> a écrit : Looks like I already started with that before I left in February :) I can reproduce the bug and I will try to look into it. Here is the corresponding task: https://phabricator.mitk.org/T28772 Best, Peter ________________________________ Von: Nil Goyette <nil.goye...@imeka.ca<mailto:nil.goye...@imeka.ca>> Gesendet: Mittwoch, 27. Oktober 2021 17:22 An: Neher, Peter Cc: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net> Betreff: Re: [mitk-users] 2D FiberBundleMapper Hi Peter, I understand, I had the same kid "problem" last year :) No, I didn't investigate more. Our program based on MITK is not a priority right now and I've put enough time on that bug to be discouraged, so I was waiting for an easy answer! I'll wait and hope that you accidentally reproduce this bug when you update your dependencies. Thanks for the answer. Le mar. 26 oct. 2021, à 03 h 32, Neher, Peter <p.ne...@dkfz-heidelberg.de<mailto:p.ne...@dkfz-heidelberg.de>> a écrit : Hi Nil, sorry for getting back to you on this so late. I was on parental leave until yesterday. Regarding your problem with VTK9, I unfortunately don't have any experience with this yet. I am planning to get on this in the next months, since we will have new projects that are going to be based on MITK Diffusion. As soon as I have any insights there I can let you know. If you already made progress, we are of course happy for contributions! I know, this is probably not the answer you hoped for. Sorry about that :) Best, Peter ________________________________ Von: Nil Goyette <nil.goye...@imeka.ca<mailto:nil.goye...@imeka.ca>> Gesendet: Dienstag, 28. September 2021 18:48 An: mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net> Betreff: Re: [mitk-users] 2D FiberBundleMapper Hi all, Anyone can help me with this problem? If Peter Neher is still around, he's the best person to answer this question. Nil Le jeu. 9 sept. 2021, à 13 h 04, Nil Goyette <nil.goye...@imeka.ca<mailto:nil.goye...@imeka.ca>> a écrit : Hi all, I've been trying to port our application to MITK 2021.02. I usually look at mitk-diffusion because we both work with the FiberBundle class and this helps me a lot! (Thank you Peter). However, I have a problem that I'm unable to solve. The 2D FiberBundle doesn't seem to work with vtk9. See https://i.imgur.com/d8I2PtP.png * The crosshair is in the middle of a set of streamlines but we only see them in the sagittal view. If I want to see them in the other views, I need to place the crosshair at a "random" location. To see them in all views, I need to be at a weird location that is not the center of the image. * The streamlines are visible only in 3 slices. If I go further than that, they simply disappear. * But they are completely visible like in the 3D view. I tried changing the Fiber2DSliceThickness property. To have an "acceptable" result, I need to use a really small number like 0.01. The screenshot above is using 0.1. At 0.5, I can see the whole streamlines. * It's as if the streamlines are not where we see them. As if they were really tiny. * Or the shaders are simply broken on vtk9. I can clearly see that the mapper in mitk-diffusion (latest release using VTK 8.1.0) works, so I tried removing our modifications as much as possible to be as identical to mitk-diffusion as possible. I'm using the same TrackVis loader, FiberBundle, mapper 2D 3D, etc. It didn't change anything. At that point, I'm already at several days of debugging, I don't know what to try and I would gladly accept any help! Nil During this time of social distancing, we offer free webinars on subjects that matter.<https://www.imeka.ca/webinars/> [https://www.imeka.ca/app/uploads/2021/03/logo-imeka-nom-10years-dark-fond-blanc-e1616690355918.png] CONFIDENTIALITY NOTICE: This message, and any attachments, is intended only for the use of the addressee or his authorized representative. It may contain information that is privileged, confidential and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, or his authorized representative, you are hereby notified that any dissemination, distribution or copying of this message and any attachments is strictly prohibited. The integrity of this message cannot be guaranteed on the Internet, IMEKA shall not be liable for its content if altered, changed or falsified. If you have received this message in error, please contact immediately the sender and delete this message and any attachments from your system. 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