Dear MITK-Team,
I am using Ubuntu 20.04 and trying to use the MITK Phenotyping Package to extract radiomics features. Unfortunately, I encountered the following error messages when using the command line tool: MitkCLGlobalImageFeatures.sh The output files are empty. This is the terminal output I receive: zhang@T450s:~$ ~/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/MitkCLGlobalImageFeatures.sh -i ~/Radiomics/Img_Folder/t2.nrrd -m ~/Radiomics/t2/les1.nrrd -o ~/Radiomics/output -a true -log ~/Radiomics/logfile !Thu Feb 2 14:19:09 2023 0.090! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.090! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkDICOMReaderServices.so failed. !0.134! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.134! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkDiffusionCoreIO.so failed. !0.178! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.178! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkMultilabelIO.so failed. !0.181! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libpng12.so.0: cannot open shared object file: No such file or directory !0.181! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkDiffusionIO.so failed. !0.183! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.183! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkDicomRTIO.so failed. !0.186! WARNING: In load_impl at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:76 : libicuuc.so.52: cannot open shared object file: No such file or directory !0.186! WARNING: In AutoLoadModulesFromPath at /home/mgoetz/radiomics/mitk/Modules/CppMicroServices/core/src/util/usUtils.cpp:176 : Auto-loading of module /home/zhang/Packages/MITK-Phenotyping-2018-10-18-linux64/MITK-2016.11.99_r5cccf9-linux64/bin/MitkCore/libMitkCESTIO.so failed. Running Command Line Utility *Global Image Feature calculator* [0.223] Version: 1.22 [0.224] loading /home/zhang/Radiomics/Img_Folder/t2.nrrd via itk::ImageIOFactory... [0.225] ioRegion: ImageIORegion (0x7fff199a3210) Dimension: 3 Index: 0 0 0 Size: 640 640 29 [0.242] [96.7212, 94.3366, 6.33276] [0.242] [-103.279, -120.108, -33.4472] [0.242] used time geometry: ProportionalTimeGeometry [0.242] number of image components: 1 [0.242] ...finished! [0.252] loading /home/zhang/Radiomics/t2/les1.nrrd via itk::ImageIOFactory... [0.252] ioRegion: ImageIORegion (0x7fff199a3210) Dimension: 3 Index: 0 0 0 Size: 640 640 29 [0.322] [96.7212, 94.3366, 6.33276] [0.322] [-103.279, -120.108, -33.4472] [0.322] used time geometry: ProportionalTimeGeometry [0.322] number of image components: 1 [0.323] ...finished! [0.363] Start creating Mask without NaN zhang@T450s:~$ It does seem to me that these packages are discontinued: libicuuc.so.52 libpng12.so.0 Do you have any ideas how I can solve these two problems? Is MITK phenotyping discontinued? Thank you for your devotion to development of MITK. Best, K. Zhang
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