Apache error log says: mod_perl/1.25
That means nothing, besides having mod_perl present. You need to configure the server to run your script under mod_perl.
Assuming that your script is under:/var/www/beta/modperl.cgi, your configuration:
PerlWarn On PerlTaintCheck On PerlModule Apache::PerlRun
<Directory "/var/www/beta">
SetHandler perl-script
PerlHandler Apache::PerlRun
Options ExecCGI
allow from all
PerlSendHeader On
</Directory>should work, as long as you don't reset it, somewhere later in httpd.conf. e.g. with ScriptAlias directive, which will use mod_cgi to run the script.
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