The following module was proposed for inclusion in the Module List:
modid: RNA::HairpinFigure
DSLIP: Rdpfp
description: Draw hairpin-like text figure
userid: SHENWEI (Wei Shen)
chapterid: 23 (Miscellaneous_Modules)
communities:
Mailinglists
similar:
None
rationale:
miRNA database miRBase maintains miRNAs and their precursors --
pre-miRNAs which have hairpin-like secondary structures. They
provide the hairpin-like text figure along with sequences and
secondary structures in dot-bracket notation which could produced by
ViennaRNA package.
However, neigher miRBase nor ViennaRNA provide any scripts or
programs to transfrom dot-bracket notation to hairpin-like text
figure, which was needed in our miRNA prediction project.
RNA::HairpinFigure draws hairpin-like text figure from RNA sequence
and its secondary structure in dot-bracket notation. If the hairpin
have multi loops, they will be deleted and treated as a big loop,
the longest stem will be the final stem.
enteredby: SHENWEI (Wei Shen)
enteredon: Fri Dec 13 14:43:17 2013 UTC
The resulting entry would be:
RNA::
::HairpinFigure Rdpfp Draw hairpin-like text figure SHENWEI
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