maybe this has been discussed already a lot but I would still dare to ask: 

To me it seems that for taxonomists, the use of individual partial warps
comes largely from the need to interpret the CVA analysis and find the most
informative characters to differentiate the species. These variables later
can be used in further taxonomic work. 

In the "traditional" morphometrics one can add/remove variables one by one
and leave the most informative ones - a widely used practice, I believe. 

With geometric morphometrics, for the mathematical reasons discussed before,
one will conduct CVA on relative warp scores
The results will tell that the most important variable for differentiating
the two species is RW5. But this is not a variable a taxonomist would like
to use. OK, I can go back to RW analysis and explore shape variation related
to RW5. Still it is speculative, compared with the  rigorous statistical
procedure of selecting "traditional" variables by their within to among
group variance (or vice versa?).
One can also remove a certain part of landmarks manually and do the analysis
again, but this is also subjective. 

Probably it does not make much sense to choose the most important landmarks,
because the shape is analysed as a whole, in relation to other landmarks?
There may not be one or two "the most informative" landmarks, which could be
informative alone?

Yet, I wonder whether there is there any accepted statistical procedure to
select the most useful characters (landmarks) for species differentiation?

Thanks, 

Asta Audzijonyte


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