----- Forwarded message from al cardini -----
Date: Tue, 6 Nov 2012 17:26:10 -0500
From: al cardini
Reply-To: al cardini
Subject: Re: Distance matrix of Foote's Disparity
To: [email protected]
Aki, if someone hasn't already answered and if you're interested in
Procrustes distances, TPSSmall will do it for both 2D and 3D data.
Also, Morphologika does it (it's in the cvs file you can save after a
GPA and PCA). Possibly, but I am really unsure, PAST might have
something too.
Good luck.
Cheers
Andrea
On 6 November 2012 00:06, <[email protected]> wrote:
>
> ----- Forwarded message from Aki Watanabe -----
>
> Date: Sun, 4 Nov 2012 21:09:07 -0500
> From: Aki Watanabe
> Reply-To: Aki Watanabe
> Subject: Re: Distance matrix of Foote's Disparity
> To: [email protected]
>
> Hi all,
>
> I'm not sure if someone has done this already, but I spent some time this
> weekend to write an R script that will produce a distance matrix of
> Procrustes distances (not Foote's disparity as I originally wrote) between
> each pair of species/specimens/objects. If anyone is interested, I would be
> happy to send the script to you.
>
> Best regards,
> Aki
>
>
> On Sun, Nov 4, 2012 at 8:15 PM, <[email protected]>
> wrote:
>>
>>
>> ----- Forwarded message from [email protected] -----
>>
>> Date: Sat, 03 Nov 2012 00:46:10 -0700
>> From: [email protected]
>> Reply-To: [email protected]
>> Subject: Distance matrix of Foote's Disparity
>> To: [email protected]
>>
>>
>> ----- Forwarded message from Aki Watanabe -----
>>
>> Date: Fri, 2 Nov 2012 15:48:23 -0400
>> From: Aki Watanabe
>> Reply-To: Aki Watanabe
>> Subject: Distance matrix of Foote's Disparity
>> To: [email protected]
>>
>> Hi everyone,
>>
>> Is there a script (preferably R or Python) or a program available that
>> outputs a distance matrix of Foote's disparity between pairs of specimens
>> for a 2D dataset? This is for conducting a Mantel test with another distance
>> matrix of pairwise differences in an ecological variable.
>>
>> Thank you.
>>
>> Best,
>> Aki
>>
>> --
>> Aki Watanabe
>> Division of Paleontology
>> Richard Gilder Graduate School
>> American Museum of Natural History
>> Central Park West at 79th Street
>> New York, NY 10024
>>
>> Florida State University - MS '12
>> University of Chicago - BA '09
>>
>> website: https://sites.google.com/site/akinopteryx/
>> weblog: http://akiopteryx.blogspot.com/
>>
>>
>>
>>
>> ----- End forwarded message -----
>>
>>
>>
>>
>>
>>
>> ----- End forwarded message -----
>>
>>
>>
>
>
>
> --
> Aki Watanabe
> Division of Paleontology
> Richard Gilder Graduate School
> American Museum of Natural History
> Central Park West at 79th Street
> New York, NY 10024
>
> Florida State University - MS '12
> University of Chicago - BA '09
>
> website: https://sites.google.com/site/akinopteryx/
> weblog: http://akiopteryx.blogspot.com/
>
>
>
>
> ----- End forwarded message -----
>
>
>
--
NO DOCX, XLSX AND PPTX, PLEASE!!!
COAUTHORS AND CONTRIBUTORS, PLEASE, FOR SHARING FILES, CONVERT THEM IN
DOC, XLS (UNLESS LONGER THAN 256 COLUMNS) AND PPT
Dr. Andrea Cardini
Researcher in Animal Biology
Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e
Reggio Emilia, l.go S. Eufemia 19, 41121 Modena, Italy
Honorary Fellow
Functional Morphology and Evolution Unit, Hull York Medical School
University of Hull, Cottingham Road, Hull, HU6 7RX, UK
University of York, Heslington, York YO10 5DD, UK
Adjunct Associate Professor
Centre for Forensic Science , The University of Western Australia
35 Stirling Highway, Crawley WA 6009, Australia
E-mail address: [email protected], [email protected],
[email protected], [email protected]
Webpage: http://sites.google.com/site/hymsfme/drandreacardini
Datasets:
http://ads.ahds.ac.uk/catalogue/archive/cerco_lt_2007/overview.cfm#metadata
Editorial board for:
Zoomorphology:
http://www.springer.com/life+sciences/animal+sciences/journal/435
Journal of Zoological Systematics and Evolutionary Research:
http://www.wiley.com/bw/journal.asp?ref=0947-5745&site=1
Hystrix, the Italian Journal of Mammalogy:
http://www.italian-journal-of-mammalogy.it/
----- End forwarded message -----
