----- Forwarded message from Paolo Piras <[email protected]> -----
Date: Fri, 22 Mar 2013 10:00:57 -0400
From: Paolo Piras <[email protected]>
Reply-To: Paolo Piras <[email protected]>
Subject: Fiji is awsome!
To: "[email protected]" <[email protected]>
Simply AWSOME!
Paolo Colangelo indicated to me this software
Maybe someone already knows it but I want to share this information anyway.
It's just two days that I'm playing with it but for what I can see:
Freeware
Java based, thus platform-free
Powerful dicom importing and treshlod editing
Powerful surface reconstruction
Powerful volume reconstruction
Powerful landmarking on both surface and inner space of the reconstructed volume
Very extended help
Under a constant development
See WHERE it has been published
Primary reference: Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise,
Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden,
Stephan Saalfeld, Benjamin Schmid, Jean-Yves Tinevez, Daniel James White,
Volker Hartenstein, Kevin Eliceiri, Pavel Tomancak and Albert Cardona (2012).
"Fiji: an open-source platform for biological-image analysis". Nature Methods
9(7) (7): 676–682. doi:10.1038/nmeth.2019.
http://www.nature.com/nmeth/journal/v9/n7/full/nmeth.2019.html.
Benjamin Schmid , Johannes Schindelin , Albert Cardona , Mark Longair and
Martin Heisenberg (2010). "A high-level 3D visualization API for Java and
ImageJ". BMC Bioinformatics 11: 274. doi:10.1186/1471-2105-11-274. PMC 2896381.
PMID 20492697. http://www.biomedcentral.com/1471-2105/11/274/abstract.
Thomas Walter, David W Shattuck, Richard Baldock, Mark E Bastin, Anne E
Carpenter, Suzanne Duce, Jan Ellenberg, Adam Fraser, Nicholas Hamilton, Steve
Pieper, Mark A Ragan, Jurgen E Schneider, Pavel Tomancak and Jean-Karim Hériché
(2010). "Visualization of image data from cells to organisms". Nature Methods 7
(3s): S26–S41. doi:10.1038/nmeth.1431.
http://www.nature.com/nmeth/journal/v7/n3s/abs/nmeth.1431.html.
Best
paolo
----- End forwarded message -----
