Hi
In order to have a chance at fixing this issue we will need more
information from you about the circumstances under which mpiBLAST
crashes. The full command line, version of mpich/lam/openmpi, the
toolbox version, the mpiblast version, the database, and the query
file. The 1.4.0 release passed our basic tests for -m 8, so if we can
reproduce your crash it should be added as a regression test. If the
query and database files are more than about 1Kb you'll have to send
them to me off-list.
-Aaron
Intikhab Alam wrote:
Hi,
Fixes to mpiBLAST version 1.1.1 and 1.2.0 say that mpiblast crashing
when writing tabular format output (-m 8 -m 9) was fixed. I tested the
latest version several times but it still crashes or just hangs without
any output if I issue -m 8 on the commandline, however without -m8 it
works.
can somebody help?
Thanks,
Intikhab Alam
--
Research Associate
School of Comupter Science
University of Manchester
LF7, Klburn Building,
Oxford Road Manchester, M13 9PL
United Kingdom
http://www.cs.man.ac.uk/~ialam
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