Hi All, I am doing a final project for my Parallel Processing class on BLAST and mpiBlast, and probably mpiBlast-PIO as well. However, I have two issues. First, I can't "make" mpiblast-1.4.0. I have errors in blast_hooks.c in function 'initBLAST'. I have copied output below:
blast_hooks.c: In function `initBLAST': blast_hooks.c:698: error: structure has no member named `query_adjustments' blast_hooks.c:699: error: structure has no member named `effective_db_lengths' blast_hooks.c: In function `getQuery': blast_hooks.c:750: error: structure has no member named `current_queryI' blast_hooks.c: In function `writeSearchStatistics': blast_hooks.c:1246: error: structure has no member named `stats' blast_hooks.c:1240: warning: unused variable `atp' blast_hooks.c:1242: warning: unused variable `anp' blast_hooks.c: In function `runBLAST': blast_hooks.c:1369: error: structure has no member named `calculate_statistics_and_exit' blast_hooks.c:1371: error: structure has no member named `calculate_statistics_and_exit' blast_hooks.c:1398: error: structure has no member named `current_queryI' blast_hooks.c: In function `outputResults': blast_hooks.c:1532: error: structure has no member named `calculate_statistics_and_exit' blast_hooks.c:1533: error: structure has no member named `stats' blast_hooks.c:1533: error: structure has no member named `stats' blast_hooks.c: At top level: /dists/cscluster/07jmc/toolbox/ncbi/include/objentgene.h:143: warning: `Method_methodFree' declared `static' but never defined /dists/cscluster/07jmc/toolbox/ncbi/include/objentgene.h:144: warning: `Method_methodAsnRead' declared `static' but never defined /dists/cscluster/07jmc/toolbox/ncbi/include/objentgene.h:145: warning: `Method_methodAsnWrite' declared `static' but never defined make[2]: *** [mpiblast-blast_hooks.o] Error 1 make[2]: Leaving directory `/dists/cscluster/07jmc/mpiblast-1.4.0/src' make[1]: *** [all] Error 2 make[1]: Leaving directory `/dists/cscluster/07jmc/mpiblast-1.4.0/src' make: *** [all-recursive] Error 1 I am running all this on a cluster at Williams College. For details about the cluster, visit http://www.cs.williams.edu/documentation/cscluster.html... My second issue is that I'm looking for a minor parallel programming mission to add onto your mpiBLAST, and don't really know where to begin. I read in one of the various READMEs that it would be a good idea to contact this list to get advice, etc. Basically, I don't even know where to start, and could do with some pointers (haha). I look forward to any feedback, and I'm super excited about this project. Thank you for your time, Jessica Chung '07 Williams College CS Major ------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Mpiblast-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mpiblast-users
