Oystein, I have seen the same problem before. The index files (.pnd and .pni) is critical for mpiblast to fetch sequence data. It looks to me that mpiformatdb doesn't generate correct index files when creating just one fragment. Could you try formatting the database into multiple fragments?
Thanks, Heshan On Mon, 2006-07-10 at 18:36 -0500, Oystein Thorsen wrote: > Hi, > I'm trying to run a small example on mpiblast-pio, but one (or maybe two) > of the files created by mpiformatdb is causing problems. I'm only creating > one fragment (as a testcase) and the .pnd and .pni files are empty (size > 0). mpiblast-pio doesn't like this very much.... > > I don't know anything about bioinformatics so there might be a good reason > why these files are empty, but it is weird that the application doesn't > allow the files to be empty. Does anybody have any experience with this? > > Regards, > > Oystein Thorsen > > > > ------------------------------------------------------------------------- > Using Tomcat but need to do more? Need to support web services, security? > Get stuff done quickly with pre-integrated technology to make your job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 > _______________________________________________ > Mpiblast-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/mpiblast-users ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Mpiblast-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mpiblast-users
