Actually it is the C preprocessor which depends on GMP, but again, it doesn't dynamically link with GMP on debian5-32 any more:
wbh...@debian5-32:~$ldd /usr/bin/cpp linux-gate.so.1 => (0xb7fa5000) libc.so.6 => /lib/i686/cmov/libc.so.6 (0xb7e3b000) /lib/ld-linux.so.2 (0xb7fa6000) Bill. 2009/11/15 Bill Hart <goodwillh...@googlemail.com>: > OK, problem seems to have gone on debian5-32: > > ldd /usr/bin/gcc > linux-gate.so.1 => (0xb7f44000) > libc.so.6 => /lib/i686/cmov/libc.so.6 (0xb7dda000) > /lib/ld-linux.so.2 (0xb7f45000) > > So I can't try any of the above. Looks like someone just statically > linked gcc against GMP. And Pari now compiles just fine with > LD_LIBRARY_PATH set to the mpir/.libs directory. > > That will fix the problem with regard to building sage binaries anyhow. > > Bill. > > 2009/11/15 Bill Hart <goodwillh...@googlemail.com>: >> A more robust solution is to create a little wrapper script for gcc >> which sets LD_LIBRARY_PATH to the system library path (the original >> LD_LIBRARY_PATH before the Sage environment was set). This is actually >> the accredited technique for complex situations (such as the one we >> have). >> >> http://www.linux.org/docs/ldp/howto/Program-Library-HOWTO/shared-libraries.html >> >> Bill. >> >> 2009/11/15 Bill Hart <goodwillh...@googlemail.com>: >>> Although it doesn't fix the cython issue, one solution for Pari would >>> be to statically link against MPIR. However it isn't a proper fix >>> because there is every chance that a similar bug could be hit building >>> any of the Sage spkg's. Statically linking MPIR against all of them >>> would bloat the binary size, I believe. >>> >>> Bill. >>> >>> 2009/11/15 Bill Hart <goodwillh...@googlemail.com>: >>>> I'm probably missing something important here, but why set >>>> LD_LIBRARY_PATH to the sage environment for either Configure or make, >>>> when building Pari? >>>> >>>> The correct way to tell Pari which readline and gmp to link against is >>>> --with-gmp=.... and --with-readline=..... >>>> >>>> LD_LIBRARY_PATH should only be changed at runtime. >>>> >>>> Of course make check probably both compiles the test suite and >>>> executes it, which requires LD_LIBRARY_PATH set two different ways at >>>> the same time. >>>> >>>> There is also a potential issue with Cython (I didn't check how Cython >>>> calls the compiler). It wants to run the C compiler at Sage runtime. >>>> That's also potentially messed up if someone writes some cython code >>>> which does constant folding. >>>> >>>> Really and truly, the gcc should not be dynamically linked against >>>> gmp, but statically linked. Under normal circumstances it is not a >>>> problem because the user simply adds the Sage local libs directory to >>>> LD_LIBRARY_PATH, leaving the system library path in there. Here we >>>> don't want to do that because we are providing our own version of >>>> "GMP". >>>> >>>> Basically there is no right way of dealing with an issue like this. If >>>> you fork a library that gcc uses then dynamically link gcc against >>>> that library, it's broken. >>>> >>>> Bill. >>>> >>>> 2009/11/15 Jason Moxham <ja...@njkfrudils.plus.com>: >>>>> >>>>> On Sunday 15 November 2009 02:24:47 William Stein wrote: >>>>>> On Sat, Nov 14, 2009 at 6:17 PM, Jason Moxham <ja...@njkfrudils.plus.com> >>>>> wrote: >>>>>> > Of course , that is the error >>>>>> > LD_LIBRARY_PATH sets the path for executables so there is no need for >>>>>> > it >>>>>> > to be set when building pari (just when running it) so the only thing >>>>>> > that is USING libgmp is gcc which doesn't like it . >>>>>> >>>>>> This means that a temporary workaround is that in the spkg-install >>>>>> script for PARI we put: >>>>>> >>>>>> echo "Building and install PARI" >>>>>> TMP=LD_LIBRARY_PATH; unset LD_LIBRARY_PATH >>>>>> if [ "$UNAME" = "CYGWIN" ]; then >>>>>> # There are weird bugs in PARI's build process on Windows XP >>>>>> # under Cygwin. >>>>>> # Passing in this extra flag gets around the bug. >>>>>> $MAKE GMPINCLUDE=-I$SAGE_LOCAL/include EXTRADLLDFLAGS=-lgmp gp >>>>>> else >>>>>> $MAKE gp >>>>>> fi >>>>>> LD_LIBRARY_PATH=$TMP >>>>>> >>>>>> >>>>> >>>>> I think pari wont use readline if we do this , but I dont think sage uses >>>>> pari >>>>> like that ? so it should be OK >>>>> >>>>>> Of course, I'm curious why a FAT mpir crashes GCC... >>>>> >>>>> Yeah , weird , just seems to be debian 4.3.2 that does it , NOTE: >>>>> gcc-4.3.2 >>>>> also buggers up some other packages eg gmp-4.3.x , so it may not be worth >>>>> the >>>>> effort trying to fix it. >>>>> >>>>> >>>>>> I can't work on this now, unfortunately, since the latency of my net >>>>>> connection at this hotel is horrendous. >>>>>> >>>>>> William >>>>>> >>>>>> > On Sunday 15 November 2009 02:06:25 Jason Moxham wrote: >>>>>> >> this is with mpir-1.2 ,and I think we have only start to remove them >>>>>> >> in >>>>>> >> 1.3 >>>>>> >> >>>>>> >> I mean pari builds fine with our fat enabled mpir , but only if >>>>>> >> LD_LIBRARY_PATH does NOT point to our libmpir >>>>>> >> >>>>>> >> LD_LIBRARY_PATH is not used until linking time ? so it should have no >>>>>> >> effect on the compile . >>>>>> >> If gcc is using our libmpir internally , which it should not , then >>>>>> >> gcc >>>>>> >> may require libgmp to built with certain options , some sort of >>>>>> >> specific >>>>>> >> malloc etc >>>>>> >> >>>>>> >> On Sunday 15 November 2009 01:50:52 Bill Hart wrote: >>>>>> >> > Heh! I don't suppose gcc would be using old deprecated functions >>>>>> >> > which >>>>>> >> > we've removed. :-) >>>>>> >> > >>>>>> >> > Bill. >>>>>> >> > >>>>>> >> > 2009/11/15 Bill Hart <goodwillh...@googlemail.com>: >>>>>> >> > > That seems like a likely possibility, in which case one presumes >>>>>> >> > > there is a symbol which GMP provides and we don't, or at least our >>>>>> >> > > interface is different. >>>>>> >> > > >>>>>> >> > > I think gcc only uses GMP for constant folding though, and the >>>>>> >> > > line >>>>>> >> > > in question didn't involve any constants did it? >>>>>> >> > > >>>>>> >> > > I wonder how one even debugs something like this. I suppose you >>>>>> >> > > could valgrind gcc while compiling that one file? >>>>>> >> > > >>>>>> >> > > Bill. >>>>>> >> > > >>>>>> >> > > 2009/11/15 Jason Moxham <ja...@njkfrudils.plus.com>: >>>>>> >> > >> export >>>>>> >> > >> LD_LIBRARY_PATH=/tmp/jason/sage-4.2.1/local/lib/R/lib:/tmp/jason/sa >>>>>> >> > >>ge- 4. 2.1/local/lib/openmpi:/tmp/jason/sage-4.2.1/local/lib/: >>>>>> >> > >> >>>>>> >> > >> like the sage shell does and then we get the same error >>>>>> >> > >> >>>>>> >> > >> So I deleted all files in .../local/lib/ except libgmp* >>>>>> >> > >> and exported >>>>>> >> > >> LD_LIBRARY_PATH=/tmp/jason/sage-4.2.1/local/lib/: >>>>>> >> > >> >>>>>> >> > >> and we get the error >>>>>> >> > >> whereas without the export pari builds fine >>>>>> >> > >> >>>>>> >> > >> Could the gcc on debian32 be using the gmp in our local path to >>>>>> >> > >> do >>>>>> >> > >> its internal optimizations , whereas gcc should use the system >>>>>> >> > >> gmp >>>>>> >> > >> >>>>>> >> > >> On Sunday 15 November 2009 00:24:25 Jason Moxham wrote: >>>>>> >> > >>> It appears to be the actual environment that sage provides in >>>>>> >> > >>> its >>>>>> >> > >>> "sage subshell" >>>>>> >> > >>> >>>>>> >> > >>> >>>>>> >> > >>> ie >>>>>> >> > >>> >>>>>> >> > >>> Building pari in the sage shell >>>>>> >> > >>> >>>>>> >> > >>> sage subshell$ ./Configure --graphic=none >>>>>> >> > >>> --prefix=/tmp/jason/sage-4.2.1/local >>>>>> >> > >>> --with-readline=/tmp/jason/sage-4.2.1/local --with- >>>>>> >> > >>> gmp=/tmp/jason/sage-4.2.1/local --kernel=gmp --graphic=none && >>>>>> >> > >>> make gp Configuring pari-2.3.3 (STABLE) >>>>>> >> > >>> Checking echo to see how to suppress newlines... >>>>>> >> > >>> ...using -n. >>>>>> >> > >>> Looking for some tools first ... >>>>>> >> > >>> ...ld is /usr/bin/ld >>>>>> >> > >>> ...zcat is /bin/zcat >>>>>> >> > >>> ...gzip is /bin/gzip >>>>>> >> > >>> ...ranlib is /usr/bin/ranlib >>>>>> >> > >>> ...perl is /usr/bin/perl >>>>>> >> > >>> ...emacs is /usr/bin/emacs >>>>>> >> > >>> GNU compiler version 4.3.2 (Debian 4.3.2-1.1) >>>>>> >> > >>> Given the previous choices, sizeof(long) is 4 chars. >>>>>> >> > >>> The internal word representation of a double is l[1], l[0]. >>>>>> >> > >>> ================================================================== >>>>>> >> > >>>=== == === Building for architecture: i686 running linux >>>>>> >> > >>>(ix86/GMP >>>>>> >> > >>> kernel) 32-bit version >>>>>> >> > >>> ================================================================== >>>>>> >> > >>>=== == === C compiler is gcc -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer Executable linker is >>>>>> >> > >>> ld --export-dynamic Dynamic Lib linker is gcc -shared >>>>>> >> > >>> $(CFLAGS) $(DLCFLAGS) -Wl,-shared,- soname=$(LIBPARI_SONAME) >>>>>> >> > >>> Looking in C lib for some symbols... >>>>>> >> > >>> ...I did not find exp2. >>>>>> >> > >>> ...I did not find log2. >>>>>> >> > >>> ...Found strftime. >>>>>> >> > >>> ...Found getrusage. >>>>>> >> > >>> ...Found sigaction. >>>>>> >> > >>> ...Found TIOCGWINSZ. >>>>>> >> > >>> ...Found getrlimit. >>>>>> >> > >>> ...Found stat. >>>>>> >> > >>> ...Found vsnprintf. >>>>>> >> > >>> ...I did not find dlopen. >>>>>> >> > >>> Try again, with -ldl this time... >>>>>> >> > >>> ...Found dlopen. >>>>>> >> > >>> Checking for optional libraries and headers... >>>>>> >> > >>> ...Found libgmp in /tmp/jason/sage-4.2.1/local/lib >>>>>> >> > >>> ...Found gmp header in /tmp/jason/sage-4.2.1/local/include >>>>>> >> > >>> Using GNU MP, version 4.2.1 >>>>>> >> > >>> ### >>>>>> >> > >>> ### libX11.so not found. Please install X11 development files. >>>>>> >> > >>> ### They usually come in XFree86-devel (RPM) or xlibs-dev >>>>>> >> > >>> (Debian) >>>>>> >> > >>> packages ### >>>>>> >> > >>> ### X11 not found >>>>>> >> > >>> ### FLTK not found. Building without FLTK support >>>>>> >> > >>> Hi-Res Graphics: none >>>>>> >> > >>> ...Found libreadline in /tmp/jason/sage-4.2.1/local/lib >>>>>> >> > >>> ...Found readline header in >>>>>> >> > >>> /tmp/jason/sage-4.2.1/local/include/readline ...Found history >>>>>> >> > >>> header in /tmp/jason/sage-4.2.1/local/include/readline ### >>>>>> >> > >>> ### libncurses.so not found. Please install ncurses development >>>>>> >> > >>> files. ### They usually come in ncurses-devel (RPM) or >>>>>> >> > >>> libncurses-dev (Debian) packages >>>>>> >> > >>> ### >>>>>> >> > >>> ...Found libtermcap in /tmp/jason/sage-4.2.1/local/lib/ >>>>>> >> > >>> ...Library termcap needed by readline >>>>>> >> > >>> Using GNU readline, version 6.0 >>>>>> >> > >>> Installation prefix ? [/tmp/jason/sage-4.2.1/local] >>>>>> >> > >>> ...for architecture-independent files (share-prefix) ? >>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share] >>>>>> >> > >>> Installation directories for: >>>>>> >> > >>> ...executables (gp, gphelp) ? [/tmp/jason/sage-4.2.1/local/bin] >>>>>> >> > >>> ...libraries (libpari) ? [/tmp/jason/sage-4.2.1/local/lib] >>>>>> >> > >>> ...include files ? [/tmp/jason/sage-4.2.1/local/include] >>>>>> >> > >>> ...manual pages ? [/tmp/jason/sage-4.2.1/local/share/man/man1] >>>>>> >> > >>> ...emacs macros ? >>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/emacs/site-lisp/pari] >>>>>> >> > >>> ...other >>>>>> >> > >>> system-dependant data ? [/tmp/jason/sage-4.2.1/local/lib/pari] >>>>>> >> > >>> ...other system-independant data ? >>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/pari] Default is dynamic >>>>>> >> > >>> executable and shared library >>>>>> >> > >>> ================================================================== >>>>>> >> > >>>=== == === Extracting examples/Makefile.linux-i686 >>>>>> >> > >>> Extracting Olinux-i686/Makefile >>>>>> >> > >>> Extracting Olinux-i686/../Odos/paricfg.h >>>>>> >> > >>> ./config/paricfgDOS.h.SH: line 3: Olinux-i686/../Odos/paricfg.h: >>>>>> >> > >>> No such file or directory >>>>>> >> > >>> Extracting Olinux-i686/paricfg.h >>>>>> >> > >>> Extracting Makefile >>>>>> >> > >>> Extracting scripts and macros >>>>>> >> > >>> ...in doc >>>>>> >> > >>> ...in emacs >>>>>> >> > >>> ...in misc >>>>>> >> > >>> ================================================================== >>>>>> >> > >>>=== == === Shall we try to build pari 2.3.3 (released) now (y/n)? >>>>>> >> > >>> [n] Ok. Type "make install" when you are ready >>>>>> >> > >>> Bye ! >>>>>> >> > >>> Making gp in Olinux-i686 >>>>>> >> > >>> make[1]: Entering directory >>>>>> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686' >>>>>> >> > >>> File ../src/funclist not changed. >>>>>> >> > >>> gcc -c -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer >>>>>> >> > >>> -I. >>>>>> >> > >>> - I../src/headers -I../src/language >>>>>> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o gp.o ../src/gp/gp.c >>>>>> >> > >>> gcc -c -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer >>>>>> >> > >>> -I. >>>>>> >> > >>> - I../src/headers -I../src/language >>>>>> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o gp_rl.o >>>>>> >> > >>> ../src/gp/gp_rl.c >>>>>> >> > >>> gcc -c -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer >>>>>> >> > >>> -I. >>>>>> >> > >>> - I../src/headers -I../src/graph -o plotport.o >>>>>> >> > >>> ../src/graph/plotport.c ../src/graph/plotport.c: In function >>>>>> >> > >>> ârectticksâ: >>>>>> >> > >>> ../src/graph/plotport.c:469: internal compiler error: >>>>>> >> > >>> Segmentation >>>>>> >> > >>> fault Please submit a full bug report, >>>>>> >> > >>> with preprocessed source if appropriate. >>>>>> >> > >>> See <file:///usr/share/doc/gcc-4.3/README.Bugs> for >>>>>> >> > >>> instructions. >>>>>> >> > >>> make[1]: *** [plotport.o] Error 1 >>>>>> >> > >>> make[1]: Leaving directory >>>>>> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686' >>>>>> >> > >>> make: *** [gp] Error 2 >>>>>> >> > >>> /tmp/jason/sage-4.2.1 >>>>>> >> > >>> sage subshell$ >>>>>> >> > >>> >>>>>> >> > >>> >>>>>> >> > >>> >>>>>> >> > >>> And build it in a normal shell >>>>>> >> > >>> >>>>>> >> > >>> >>>>>> >> > >>> jasonmox...@debian5-32:/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3 >>>>>> >> > >>>.p5 /s rc$ ./Configure --graphic=none >>>>>> >> > >>> --prefix=/tmp/jason/sage-4.2.1/local --with- >>>>>> >> > >>> readline=/tmp/jason/sage-4.2.1/local >>>>>> >> > >>> --with-gmp=/tmp/jason/sage-4.2.1/local -- kernel=gmp >>>>>> >> > >>> --graphic=none && make gp >>>>>> >> > >>> Configuring pari-2.3.3 (STABLE) >>>>>> >> > >>> Checking echo to see how to suppress newlines... >>>>>> >> > >>> ...using -n. >>>>>> >> > >>> Looking for some tools first ... >>>>>> >> > >>> ...ld is /usr/bin/ld >>>>>> >> > >>> ...zcat is /bin/zcat >>>>>> >> > >>> ...gzip is /bin/gzip >>>>>> >> > >>> ...ranlib is /usr/bin/ranlib >>>>>> >> > >>> ...perl is /usr/bin/perl >>>>>> >> > >>> ...emacs is /usr/bin/emacs >>>>>> >> > >>> Looking for the compilers ... >>>>>> >> > >>> ...cc is /usr/bin/cc >>>>>> >> > >>> ...gcc is /usr/bin/gcc >>>>>> >> > >>> GNU compiler version 4.3.2 (Debian 4.3.2-1.1) >>>>>> >> > >>> Given the previous choices, sizeof(long) is 4 chars. >>>>>> >> > >>> The internal word representation of a double is l[1], l[0]. >>>>>> >> > >>> ================================================================== >>>>>> >> > >>>=== == === Building for architecture: i686 running linux >>>>>> >> > >>>(ix86/GMP >>>>>> >> > >>> kernel) 32-bit version >>>>>> >> > >>> ================================================================== >>>>>> >> > >>>=== == === C compiler is /usr/bin/gcc -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit- frame-pointer >>>>>> >> > >>> Executable linker is /usr/bin/gcc -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit- frame-pointer >>>>>> >> > >>> -Wl,--export-dynamic >>>>>> >> > >>> Dynamic Lib linker is /usr/bin/gcc -shared $(CFLAGS) >>>>>> >> > >>> $(DLCFLAGS) -Wl,- shared,-soname=$(LIBPARI_SONAME) >>>>>> >> > >>> Looking in C lib for some symbols... >>>>>> >> > >>> ...I did not find exp2. >>>>>> >> > >>> ...I did not find log2. >>>>>> >> > >>> ...Found strftime. >>>>>> >> > >>> ...Found getrusage. >>>>>> >> > >>> ...Found sigaction. >>>>>> >> > >>> ...Found TIOCGWINSZ. >>>>>> >> > >>> ...Found getrlimit. >>>>>> >> > >>> ...Found stat. >>>>>> >> > >>> ...Found vsnprintf. >>>>>> >> > >>> ...I did not find dlopen. >>>>>> >> > >>> Try again, with -ldl this time... >>>>>> >> > >>> ...Found dlopen. >>>>>> >> > >>> Checking for optional libraries and headers... >>>>>> >> > >>> ...Found libgmp in /tmp/jason/sage-4.2.1/local/lib >>>>>> >> > >>> ...Found gmp header in /tmp/jason/sage-4.2.1/local/include >>>>>> >> > >>> Using GNU MP, version 4.2.1 >>>>>> >> > >>> ### >>>>>> >> > >>> ### libX11.so not found. Please install X11 development files. >>>>>> >> > >>> ### They usually come in XFree86-devel (RPM) or xlibs-dev >>>>>> >> > >>> (Debian) >>>>>> >> > >>> packages ### >>>>>> >> > >>> ### X11 not found >>>>>> >> > >>> ### FLTK not found. Building without FLTK support >>>>>> >> > >>> Hi-Res Graphics: none >>>>>> >> > >>> ...Found libreadline in /tmp/jason/sage-4.2.1/local/lib >>>>>> >> > >>> ...Found readline header in >>>>>> >> > >>> /tmp/jason/sage-4.2.1/local/include/readline ...Found history >>>>>> >> > >>> header in /tmp/jason/sage-4.2.1/local/include/readline ### >>>>>> >> > >>> ### libncurses.so not found. Please install ncurses development >>>>>> >> > >>> files. ### They usually come in ncurses-devel (RPM) or >>>>>> >> > >>> libncurses-dev (Debian) packages >>>>>> >> > >>> ### >>>>>> >> > >>> ### >>>>>> >> > >>> ### Readline library detected, but does not seem to work >>>>>> >> > >>> ### >>>>>> >> > >>> ### Building without GNU readline support >>>>>> >> > >>> Installation prefix ? [/tmp/jason/sage-4.2.1/local] >>>>>> >> > >>> ...for architecture-independent files (share-prefix) ? >>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share] >>>>>> >> > >>> Installation directories for: >>>>>> >> > >>> ...executables (gp, gphelp) ? [/tmp/jason/sage-4.2.1/local/bin] >>>>>> >> > >>> ...libraries (libpari) ? [/tmp/jason/sage-4.2.1/local/lib] >>>>>> >> > >>> ...include files ? [/tmp/jason/sage-4.2.1/local/include] >>>>>> >> > >>> ...manual pages ? [/tmp/jason/sage-4.2.1/local/share/man/man1] >>>>>> >> > >>> ...emacs macros ? >>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/emacs/site-lisp/pari] >>>>>> >> > >>> ...other >>>>>> >> > >>> system-dependant data ? [/tmp/jason/sage-4.2.1/local/lib/pari] >>>>>> >> > >>> ...other system-independant data ? >>>>>> >> > >>> [/tmp/jason/sage-4.2.1/local/share/pari] Default is dynamic >>>>>> >> > >>> executable and shared library >>>>>> >> > >>> ================================================================== >>>>>> >> > >>>=== == === Extracting examples/Makefile.linux-i686 >>>>>> >> > >>> Extracting Olinux-i686/Makefile >>>>>> >> > >>> Extracting Olinux-i686/../Odos/paricfg.h >>>>>> >> > >>> ./config/paricfgDOS.h.SH: line 3: Olinux-i686/../Odos/paricfg.h: >>>>>> >> > >>> No such file or directory >>>>>> >> > >>> Extracting Olinux-i686/paricfg.h >>>>>> >> > >>> Extracting Makefile >>>>>> >> > >>> Extracting scripts and macros >>>>>> >> > >>> ...in doc >>>>>> >> > >>> ...in emacs >>>>>> >> > >>> ...in misc >>>>>> >> > >>> ================================================================== >>>>>> >> > >>>=== == === Shall we try to build pari 2.3.3 (released) now (y/n)? >>>>>> >> > >>> [n] Ok. Type "make install" when you are ready >>>>>> >> > >>> Bye ! >>>>>> >> > >>> Making gp in Olinux-i686 >>>>>> >> > >>> make[1]: Entering directory >>>>>> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686' >>>>>> >> > >>> File ../src/funclist not changed. >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -I../src/language -o >>>>>> >> > >>> gp.o ../src/gp/gp.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -I../src/language -o gp_rl.o >>>>>> >> > >>> ../src/gp/gp_rl.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -I../src/graph -o >>>>>> >> > >>> plotport.o >>>>>> >> > >>> ../src/graph/plotport.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - >>>>>> >> > >>> I../src/headers >>>>>> >> > >>> -o plotnull.o ../src/graph/plotnull.c >>>>>> >> > >>> cat ../src/kernel/gmp/mp.c ../src/kernel/none/cmp.c >>>>>> >> > >>> ../src/kernel/none/gcdll.c ../src/kernel/none/ratlift.c >>>>>> >> > >>> ../src/kernel/none/invmod.c >>>>>> >> > >>> ../src/kernel/gmp/gcd.c ../src/kernel/none/mp_indep.c >>>>>> >> > >>> ../src/kernel/none/add.c >>>>>> >> > >>> >>>>>> >> > >>> > mp.c >>>>>> >> > >>> >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -I/tmp/jason/sage-4.2.1/local/include -o mp.o mp.c /usr/bin/gcc >>>>>> >> > >>> -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o mpinl.o >>>>>> >> > >>> ../src/kernel/none/mpinl.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o alglin1.o >>>>>> >> > >>> ../src/basemath/alglin1.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o alglin2.o ../src/basemath/alglin2.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o arith1.o ../src/basemath/arith1.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o arith2.o ../src/basemath/arith2.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o base1.o ../src/basemath/base1.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o base2.o ../src/basemath/base2.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o base3.o ../src/basemath/base3.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o base4.o ../src/basemath/base4.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o base5.o ../src/basemath/base5.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o bibli1.o ../src/basemath/bibli1.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o bibli2.o ../src/basemath/bibli2.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o buch1.o ../src/basemath/buch1.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o buch2.o ../src/basemath/buch2.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o buch3.o ../src/basemath/buch3.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o buch4.o ../src/basemath/buch4.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o Flx.o ../src/basemath/Flx.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o galconj.o >>>>>> >> > >>> ../src/basemath/galconj.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o gen1.o ../src/basemath/gen1.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o gen2.o >>>>>> >> > >>> ../src/basemath/gen2.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o gen3.o >>>>>> >> > >>> ../src/basemath/gen3.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o ifactor1.o >>>>>> >> > >>> ../src/basemath/ifactor1.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o perm.o ../src/basemath/perm.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o polarit1.o >>>>>> >> > >>> ../src/basemath/polarit1.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o polarit2.o ../src/basemath/polarit2.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >>>>>> >> > >>> I../src/headers -o polarit3.o ../src/basemath/polarit3.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o Qfb.o >>>>>> >> > >>> ../src/basemath/Qfb.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o RgX.o >>>>>> >> > >>> ../src/basemath/RgX.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o rootpol.o >>>>>> >> > >>> ../src/basemath/rootpol.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o subcyclo.o ../src/basemath/subcyclo.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >>>>>> >> > >>> I../src/headers -o subgroup.o ../src/basemath/subgroup.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o trans1.o >>>>>> >> > >>> ../src/basemath/trans1.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o trans2.o ../src/basemath/trans2.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o trans3.o ../src/basemath/trans3.c cd ../src/desc && >>>>>> >> > >>> /usr/bin/perl gen_member pari.desc > members-linux- >>>>>> >> > >>> i686-15930.tmp >>>>>> >> > >>> mv ../src/desc/members-linux-i686-15930.tmp >>>>>> >> > >>> ../src/language/members.h /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o anal.o ../src/language/anal.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o compat.o >>>>>> >> > >>> ../src/language/compat.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o default.o ../src/language/default.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o errmsg.o ../src/language/errmsg.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o es.o ../src/language/es.c >>>>>> >> > >>> cd ../src/desc && /usr/bin/perl gen_proto basic pari.desc > >>>>>> >> > >>> init-linux- i686-15930.tmp >>>>>> >> > >>> mv ../src/desc/init-linux-i686-15930.tmp ../src/language/init.h >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o init.o >>>>>> >> > >>> ../src/language/init.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o intnum.o >>>>>> >> > >>> ../src/language/intnum.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o members.o ../src/language/members.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o sumiter.o ../src/language/sumiter.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o aprcl.o ../src/modules/aprcl.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o elldata.o ../src/modules/elldata.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o elliptic.o ../src/modules/elliptic.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >>>>>> >> > >>> I../src/headers -o galois.o ../src/modules/galois.c >>>>>> >> > >>> /usr/bin/gcc >>>>>> >> > >>> -c -O1 -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >>>>>> >> > >>> I../src/headers -o groupid.o ../src/modules/groupid.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o kummer.o >>>>>> >> > >>> ../src/modules/kummer.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o mpqs.o ../src/modules/mpqs.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o nffactor.o >>>>>> >> > >>> ../src/modules/nffactor.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o part.o ../src/modules/part.c >>>>>> >> > >>> /usr/bin/gcc -c -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -I. - I../src/headers -o stark.o >>>>>> >> > >>> ../src/modules/stark.c /usr/bin/gcc -c -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer -I. - I../src/headers >>>>>> >> > >>> -o subfield.o ../src/modules/subfield.c /usr/bin/gcc -c -O1 >>>>>> >> > >>> -Wall -fno-strict-aliasing -fomit-frame-pointer -I. - >>>>>> >> > >>> I../src/headers -o thue.o ../src/modules/thue.c >>>>>> >> > >>> rm -f libpari-gmp.so.2.3.3 >>>>>> >> > >>> /usr/bin/gcc -o libpari-gmp.so.2.3.3 -shared -O1 -Wall >>>>>> >> > >>> -fno-strict-aliasing -fomit-frame-pointer >>>>>> >> > >>> -Wl,-shared,-soname=libpari-gmp.so.2 mp.o mpinl.o alglin1.o >>>>>> >> > >>> alglin2.o arith1.o arith2.o base1.o base2.o base3.o base4.o >>>>>> >> > >>> base5.o bibli1.o bibli2.o buch1.o buch2.o buch3.o buch4.o Flx.o >>>>>> >> > >>> galconj.o gen1.o gen2.o gen3.o ifactor1.o perm.o polarit1.o >>>>>> >> > >>> polarit2.o polarit3.o Qfb.o RgX.o rootpol.o subcyclo.o >>>>>> >> > >>> subgroup.o >>>>>> >> > >>> trans1.o trans2.o trans3.o anal.o compat.o default.o errmsg.o >>>>>> >> > >>> es.o >>>>>> >> > >>> init.o intnum.o members.o sumiter.o aprcl.o elldata.o elliptic.o >>>>>> >> > >>> galois.o groupid.o kummer.o mpqs.o nffactor.o part.o stark.o >>>>>> >> > >>> subfield.o thue.o -lc -ldl -lm >>>>>> >> > >>> -L/tmp/jason/sage-4.2.1/local/lib -lgmp if test >>>>>> >> > >>> "libpari-gmp.so.2.3.3" != "libpari.so"; then rm -f >>>>>> >> > >>> libpari.so; ln -s libpari-gmp.so.2.3.3 libpari.so; fi >>>>>> >> > >>> if test "libpari-gmp.so.2.3.3" != "libpari-gmp.so.2"; then >>>>>> >> > >>> rm -f libpari-gmp.so.2; ln -s libpari-gmp.so.2.3.3 >>>>>> >> > >>> libpari-gmp.so.2; fi rm -f gp-dyn >>>>>> >> > >>> /usr/bin/gcc -o gp-dyn -O1 -Wall -fno-strict-aliasing >>>>>> >> > >>> -fomit-frame-pointer -Wl,--export-dynamic gp.o gp_init.o >>>>>> >> > >>> gp_rl.o >>>>>> >> > >>> highlvl.o whatnow.o plotport.o plotnull.o >>>>>> >> > >>> -L"/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686" >>>>>> >> > >>> -L/tmp/jason/sage-4.2.1/local/lib -lpari -ldl -lm - >>>>>> >> > >>> L/tmp/jason/sage-4.2.1/local/lib -lgmp >>>>>> >> > >>> rm -f ../gp >>>>>> >> > >>> ln -s Olinux-i686/gp-dyn ../gp >>>>>> >> > >>> make[1]: Leaving directory >>>>>> >> > >>> `/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3.p5/src/Olinux-i686' >>>>>> >> > >>> jasonmox...@debian5-32:/tmp/jason/sage-4.2.1/spkg/build/pari-2.3.3 >>>>>> >> > >>>.p5 /s rc$ >>>>>> >> > >>> >>>>>> >> > >>> >>>>>> >> > >>> >>>>>> >> > >>> >>>>>> >> > >>> If the line number where the error occurs is correct then it >>>>>> >> > >>> looks >>>>>> >> > >>> like libm is at fault >>>>>> >> > >>> >>>>>> >> > >>> On Saturday 14 November 2009 19:23:19 Bill Hart wrote: >>>>>> >> > >>> > Was the option -O1 passed to gcc in all instances where the >>>>>> >> > >>> > problem occurred? >>>>>> >> > >>> > >>>>>> >> > >>> > I have heard of instances where -O1 will cause macro errors >>>>>> >> > >>> > which cause the compiler to shut down. When a higher >>>>>> >> > >>> > optimisation level is used the macro which causes the crash in >>>>>> >> > >>> > gcc is optimised away. >>>>>> >> > >>> > >>>>>> >> > >>> > If that turns out to be the issue, the solution will be to >>>>>> >> > >>> > simply compile that one file with -O2 optimisation. For most >>>>>> >> > >>> > things -O1 is far too slow anyway. >>>>>> >> > >>> > >>>>>> >> > >>> > Bill. >>>>>> >> > >>> > >>>>>> >> > >>> > 2009/11/14 William Stein <wst...@gmail.com>: >>>>>> >> > >>> > > On Sat, Nov 14, 2009 at 12:05 AM, Jason Moxham >>>>>> >> > >>> > > >>>>>> >> > >>> > > <ja...@njkfrudils.plus.com> wrote: >>>>>> >> > >>> > >> Hi >>>>>> >> > >>> > >> >>>>>> >> > >>> > >> I thought I would give it a try , but I cant login to >>>>>> >> > >>> > >> debian32 , doesn't like my password , although boxen and >>>>>> >> > >>> > >> fedora32 are OK ?? I thought the passwords were all the >>>>>> >> > >>> > >> same >>>>>> >> > >>> > >> for the virtual machines. >>>>>> >> > >>> > > >>>>>> >> > >>> > > No. I've added your login info so you should be able to >>>>>> >> > >>> > > login >>>>>> >> > >>> > > now. >>>>>> >> > >>> > > >>>>>> >> > >>> > >> I havent managed to reproduce any error on some other 32bit >>>>>> >> > >>> > >> machines but nothing was exactly the same. >>>>>> >> > >>> > > >>>>>> >> > >>> > > You might want to try starting by doing >>>>>> >> > >>> > > >>>>>> >> > >>> > > export SAGE_FAT_BINARY="yes" >>>>>> >> > >>> > > >>>>>> >> > >>> > > then build sage-4.2.1.tar by typing "make", which is at >>>>>> >> > >>> > > >>>>>> >> > >>> > > http://sage.math.washington.edu/home/wstein/farm/src/ >>>>>> >> > >>> > > >>>>>> >> > >>> > > It'll take a few hours, but you should get the error. >>>>>> >> > >>> > > >>>>>> >> > >>> > > William >>>>> >>>>> >>>>> >>>>> >>>>> >>>> >>> >> > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "mpir-devel" group. To post to this group, send email to mpir-devel@googlegroups.com To unsubscribe from this group, send email to mpir-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/mpir-devel?hl=en -~----------~----~----~----~------~----~------~--~---