Thanks to everybody, and to Rob Wultsch, his link helped me to understand
what I was doing...

./configure select an automake configure or a perl one...

I ended building mysql with innodb,heap,myisam and partitions, statically
built with:

./configure --with-plugins=heap,partition,innobase,myisam
--prefix=/usr/local/mysql5/ --with-plugin-heap --with-plugin-partition
--with-plugin-innobase --with-plugin-myisam

The first line says that the flags are recognzed:
configure.pl : calling cmake /usr/src/mysql-5.5.4-m3  -DWITH_HEAP=1
-DWITH_PARTITION=1 -DWITH_INNOBASE=1 -DWITH_MYISAM=1
-DCMAKE_INSTALL_PREFIX=/usr/local/mysql5/ -DWITH_PLUGIN_HEAP=1
-DWITH_PLUGIN_PARTITION=1 -DWITH_PLUGIN_INNOBASE=1 -DWITH_PLUGIN_MYISAM=1

and after install:
show engines;
mysql> show engines;
+--------------------+---------+------------------------------------------------------------+--------------+------+------------+
| Engine             | Support |
Comment                                                    | Transactions |
XA   | Savepoints |
+--------------------+---------+------------------------------------------------------------+--------------+------+------------+
| MRG_MYISAM         | YES     | Collection of identical MyISAM
tables                      | NO           | NO   | NO         |
| PERFORMANCE_SCHEMA | YES     | Performance
Schema                                         | NO           | NO   |
NO         |
| CSV                | YES     | CSV storage
engine                                         | NO           | NO   |
NO         |
| InnoDB             | YES     | Supports transactions, row-level locking,
and foreign keys | YES          | YES  | YES        |
| MyISAM             | DEFAULT | Default engine as of MySQL 3.23 with great
performance     | NO           | NO   | NO         |
| MEMORY             | YES     | Hash based, stored in memory, useful for
temporary tables  | NO           | NO   | NO         |
+--------------------+---------+------------------------------------------------------------+--------------+------+------------+

If I'm unable to get a report from the application, I will test partitions
tomorrow, well, in a while xD

Thanks everybody...

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