>Description:
        The unpacked source differs from the source tree after a 
        ./configure && make && make distclean. This should be considered
        as Makefile bug, as e.g. package maintainers like me depends on
        a souce that cleans up it self so that we can easyly produce diffs
        containing only our own modifications. 
>How-To-Repeat:
        ./configure && make && make clean; diff -u --recursive ../orig .
>Fix:

Some diffs:

# 
# Cleans up the vio_* and ctype-* symlinks that are created by link_source
#
$ diff -u mysql-dfsg-4.0.6.gamma.orig/libmysql/Makefile.shared 
mysql-dfsg-4.0.6.gamma/libmysql/Makefile.shared 
--- mysql-dfsg-4.0.6.gamma.orig/libmysql/Makefile.shared        2002-12-16 
10:11:57.000000000 +0100
+++ mysql-dfsg-4.0.6.gamma/libmysql/Makefile.shared     2002-12-21 01:56:07.000000000 
++0100
@@ -84,6 +84,8 @@
        rm -f `echo $(mystringsobjects) | sed "s;\.lo;.c;g"` \
              `echo $(dbugobjects) | sed "s;\.lo;.c;g"` \
              `echo $(mysysobjects) | sed "s;\.lo;.c;g"` \
+             `echo $(vio_objects) | sed "s;\.lo;.c;g"` \
+              $(CHARSET_SRCS) $(CHARSET_OBJS) \
               $(mystringsextra) $(mystringsgen) $(mysysheaders) \
               ctype_extra_sources.c net.c ../linked_client_sources

There are some others.. maybe I search them later.      

>Submitter-Id:  <submitter ID>
>Originator:    Christian Hammers
>Organization:
 The Debian Project
>MySQL support: none
>Synopsis:      distclean target misses some files
>Severity:      non-critical
>Priority:      low
>Category:      mysql
>Class:         sw-bug
>Release:       4.0.6 and probably mysql-3.23.54 (Source distribution)
>Environment:
        
System: Linux app109 2.4.20-app109-1 #4 Thu Dec 5 21:44:44 CET 2002 i686 unknown 
unknown GNU/Linux
Architecture: i686
Some paths:  /usr/bin/perl /usr/bin/make /usr/local/bin/gmake /usr/bin/gcc /usr/bin/cc
GCC: Reading specs from /usr/lib/gcc-lib/i386-linux/2.95.4/specs
gcc version 2.95.4 20011002 (Debian prerelease)
Compilation info: CC='gcc'  CFLAGS=''  CXX='g++'  CXXFLAGS=''  LDFLAGS=''
LIBC: 
lrwxrwxrwx    1 root     root           13 2002-11-20 02:56 /lib/libc.so.6 -> 
libc-2.3.1.so
-rwxr-xr-x    1 root     root      1109068 2002-11-19 19:13 /lib/libc-2.3.1.so
-rw-r--r--    1 root     root      2344038 2002-11-19 19:14 /usr/lib/libc.a
-rw-r--r--    1 root     root          178 2002-11-19 19:14 /usr/lib/libc.so
-rw-r--r--    1 root     root       716080 2002-01-13 21:06 
/usr/lib/libc-client.so.2001
Configure command: ./configure '--prefix=/usr' '--exec-prefix=/usr' 
'--libexecdir=/usr/sbin' '--datadir=/usr/share' '--sysconfdir=/etc/mysql' 
'--localstatedir=/var/lib/mysql' '--includedir=/usr/include' 
'--infodir=/usr/share/info' '--mandir=/usr/share/man' '--enable-shared' 
'--with-libwrap' '--enable-assembler' '--with-berkeley-db' '--with-innodb' 
'--enable-static' '--enable-local-infile' '--with-raid' '--enable-thread-safe-client' 
'--without-readline' '--with-unix-socket-path=/var/run/mysqld/mysqld.sock' 
'--with-mysqld-user=mysql' '--without-bench' '--without-docs' 
'--with-client-ldflags=-lstdc++' '--with-extra-charsets=all'

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