Hello Rob,
MZmine version 2.13, which I just released today, includes new Java3D
libraries. So you don’t need to install them separately. In fact, I recommend
to completely remove the Java3D libraries you previously installed and start
with a clean Java runtime (JRE or JDK). Let me know if you find any problem.
Best,
Tomas
On Feb 3, 2015, at 07:21, Rob Smith
<[email protected]<mailto:[email protected]>> wrote:
Hi all,
I'm trying to look at 3d peaks in MZmine2. I'm getting the Java3d not installed
error.
I saw a few threads on this, each advising to copy the jars to
JAVA_HOME/jre/lib and the DLL (in this case the .so) to JAVA_HOME/bin.
I have 4 options in /usr/lib/jvm to pick for JAVA_HOME. I ran java -version to
get this:
java -version gives me:
java version "1.7.0_65"
OpenJDK Runtime Environment (IcedTea 2.5.3) (7u71-2.5.3-0ubuntu0.14.04.1)
OpenJDK 64-Bit Server VM (build 24.65-b04, mixed mode)
Then I opened synaptic package manager, looked up IcedTea to see that
openjdk-7-jdk is installed. The four options I have in /usr/lib/jvm are:
java-1.5.0-gcj-4.8-amd64
java-6-openjdk-amd64
java-1.7.0-openjdk-amd64
java-7-openjdk-amd64
I first copied the .jar and .so files to the java-7-openjdk-amd64 folder using
the layout described above. That did not resolve the error, so I did the same
with the remaining 3 options. The error persists.
I did note that these four folders did not have JAVA_HOME/jre/lib, just
JAVA_HOME/jre, so I copied the jars to both the jre folder and a newly created
jre/lib. The default folder permissions are the same as the jre folder, and are
the same as all the other .jar files in /usr/share/java, namely:
-rw-r--r-- 1 root root
I am using Linux, specifically Ubuntu 14.04. I installed Java3d using package
libjava3d-java which gave me:
j3dcore-1.5.2+dfsg.jar
j3dcore.jar
j3dutils.jar
vecmath.jar
vecmath-1.5.2.jar
and
libj3dcore-ogl.so
Any suggestions? Thanks!
Rob
------------------------------------------------------------------------------
Dive into the World of Parallel Programming. The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now.
http://goparallel.sourceforge.net/_______________________________________________
Mzmine-devel mailing list
[email protected]<mailto:[email protected]>
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
===============================================
Tomas Pluskal
G0 Cell Unit, Okinawa Institute of Science and Technology Graduate University
1919-1 Tancha, Onna-son, Okinawa 904-0495, Japan
WWW: https://groups.oist.jp/g0
TEL: +81-98-966-8684
Fax: +81-98-966-2890
------------------------------------------------------------------------------
Dive into the World of Parallel Programming. The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
_______________________________________________
Mzmine-devel mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/mzmine-devel
