Thanks for the responses. I will submit a bug report with details shortly! On Jun 20, 2012, at 9:03 AM, Michael Bieri wrote:
> Hi Daniel > > Can you launch nessy using the terminal command 'nessy --debug'. This runs > NESSY in debugging mode. If you start the same calculation, you should get a > more detailed error message in your terminal, which could help solving the > issue. > > Cheers > Michael Hi Daniel, In case you are not aware, I am the current maintainer of the NESSY project (until a lead developer comes forwards in the future). This appears to be a legitimate bug in the NESSY sources. I have just changed the permissions on the NESSY bug tracker, so you are able to use this without becoming a Gna! member (at https://gna.org). The best way to handle this problem is to write up the problem as a bug report (see https://gna.org/bugs/?func=additem&group=nessy). The more information you include, the better. Ideally, and as you see this for the first residue, if you could create an absolute minimum data set of maybe data for a single residue (slightly randomising if you wish to keep your data 100% private) and then detail the exact steps required to reproduce the bug, that would be much appreciated. Such a bug report will allow me to pin point the exact source of the problem (for the program relax I only usually need a few minutes but, as I am not totally familiar with the NESSY sources, this might take a bit longer). Hopefully a solution would not take long to find :) Cheers, Edward On 19 June 2012 20:20, Daniel Richman <[email protected]> wrote: > I'm running NESSY for the first time, installed using the package installer > for Ubuntu 10.04.4 LTS, and I get "Unhandled exception in thread start by" > (that's it, end of line) in the terminal, and "Fitting to Model 1, Residue 8" > (the first residue in my protein sequence that has data) in the GUI. This is > after the R2eff, variance, and pooled variance were printed for each residue, > and some of the R2o values were printed under "Fitting Model 1 to Residue 8". > Any tips? Thanks in advance. > > > -------- Original-Nachricht -------- >> Datum: Tue, 19 Jun 2012 14:20:58 -0400 >> Von: Daniel Richman <[email protected]> >> An: [email protected] >> Betreff: [Nessy-users] Unhandled exception during fitting > >> I'm running NESSY for the first time, installed using the package >> installer for Ubuntu 10.04.4 LTS, and I get "Unhandled exception in thread >> start >> by" (that's it, end of line) in the terminal, and "Fitting to Model 1, >> Residue 8" (the first residue in my protein sequence that has data) in the >> GUI. >> This is after the R2eff, variance, and pooled variance were printed for each >> residue, and some of the R2o values were printed under "Fitting Model 1 to >> Residue 8". Any tips? Thanks in advance. >> _______________________________________________ >> Nessy-users mailing list >> [email protected] >> https://mail.gna.org/listinfo/nessy-users > > -- > Michael Bieri > Kardiologie, HTx > Inselspital, Pathologie L621 > Murtenstr. 31, CH-3010 Bern > Switzerland > > Tel.: +41 31 632 13 82 > Fax: +41 31 632 88 37 > > [email protected] > www.cvrc.dkf.unibe.ch > www.insel.ch > > > NEU: FreePhone 3-fach-Flat mit kostenlosem Smartphone! > > Jetzt informieren: http://mobile.1und1.de/?ac=OM.PW.PW003K20328T7073a
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