PS: I posted the wrong query. Here it is:
var groups = ((DtoRepository<GroupDto>)repository).Session
.CreateCriteria<GroupDto>("gr")
.Add(Expression.Eq("gr.IsActive", true))
.CreateAlias("groups.Members", "member")
.Add(Expression.IsNotNull("member.Id"))
.SetFetchMode("gr.Members", NHibernate.FetchMode.Eager)
.SetResultTransformer(new DistinctRootEntityResultTransformer())
.Future<GroupDto>();
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