Hi Sabuj,

It's an Ubuntu Server LTS 64 bit. The server itself is some kind of Dell.
I think something can be wrong with it maybe? I installed smartmontools but it 
says it does not support SMART for the disk array???.
One thing which can cause such high load is disk or controller failure problems.
It has a PERC 6/I controller, I'm trying to figure out how to check health 
status on that.

Csaba
________________________________________
From: [email protected] [[email protected]] On Behalf Of 
Sabuj Pattanayek [[email protected]]
Sent: Wednesday, February 22, 2012 1:31 PM
To: [email protected]
Subject: Re: [nlug] Re: Limiting I/O load for a process

You might try using cgroups
(http://docs.redhat.com/docs/en-US/Red_Hat_Enterprise_Linux/6/html/Resource_Management_Guide/ch01.html),
it says it has a method of limiting disk i/o, but I've never tried it.
You didn't mention which distro you were using, but most modern
distros should have this.

On Mon, Feb 20, 2012 at 1:16 PM, tocsa <[email protected]> wrote:
> Thanks for pointing that out Sabuj! I knew Linux is awesome, there has
> to be a way. I have to see if this is part of the stock kernel or a
> custom kernel is needed.
>
> Csaba
>
> On Feb 20, 12:18 pm, Sabuj Pattanayek <[email protected]> wrote:
>> Try using the deadline scheduler
>>
>>
>>
>>
>>
>>
>>
>> On Mon, Feb 20, 2012 at 12:14 PM, Tilghman Lesher <[email protected]> 
>> wrote:
>> > On Mon, Feb 20, 2012 at 11:59 AM, tocsa <[email protected]> wrote:
>> >> The server in our laboratory has some problems. A PhD student is
>> >> running computation which has very heavy I/O load, but no CPU load.
>> >> The lack of CPU load means that there's nothing which would hold back
>> >> the process to hog the hard drive. Many of you are server
>> >> administrators so you know the concept of "server load". If it is
>> >> above 3, then the server is under very heavy load, above 6-7 it can
>> >> happen that you cannot log-in remotely.
>> >> So far my techniques is that I keep an open root console on my desktop
>> >> machine at the university, that console is always alive. Last week I
>> >> saw load above 22. Today I had to take a screenshot, so when I'll be a
>> >> grandpa I can show it to my grandchildren: load above 76.
>>
>> >> The machine is a server hardware, quad core with 16GB RAM, I don't
>> >> exactly know the HDD subsystem, browsing the /proc I think it's some
>> >> kind of SAS disks. It is running Ubuntu Server LTS.
>>
>> >> Question: how can I limit the I/O access of a process?
>>
>> >> I've seen numerous articles on disk quotas, network bandwidth tuning,
>> >> some on CPU load tuning, but no I/O load tuning.
>>
>> > There's nothing I can see that would do that.  However, since what
>> > you're really aiming to do is to avoid resource starvation, why not
>> > re-nice his process?  Give it a slightly lower priority, and
>> > everything else will preempt his process when those other processes
>> > need CPU and I/O time.  Ask him nicely, and he may even start his next
>> > process with a nice'd priority.
>>
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