Hi Matthew, Since everything is working when run directly from the command line (cmd), I would guess that it's something like a path issue.
Check your path at the command prompt (type "path") and in RStudio ("Sys.getenv("PATH")"). Thanks, Bill > On Dec 20, 2017, at 21:54, HUI, Ka Ho <matthew....@link.cuhk.edu.hk> wrote: > > Dear NMusers, > > Recently I need to execute NONMEM 7.4 from Rstudio terminal. I have tried the > following scripts: > `system2(“execute FIT_01.mod”)` #Through PsN, > using `system2` > `shell(“execute FIT_01.mod”)` #Through PsN, > using `shell` > `write(“execute FIT_01.mod”, “FIT_01.bat”)` > `shell(“FIT_01.bat”)` > #Through PsN, using `shell` to call a batch file > `write(“execute FIT_01.mod”, “FIT_01.bat”)` > `shell.exec(“FIT_01.bat”)` #Through > PsN, using `shell.exec` to call a batch file > The above commands, but call through C:/nm74g64/run/nmfe74.bat directly > > The above were also tested using the test dataset `CONTROL5` > > Results: > gave me the `running command '"execute FIT_01.mod"' had status 127` warning > without any execution > > (2)-(4) gave me the following messages: > Starting 1 NONMEM executions. 1 in parallel. > S:1 .. > All executions started. > Starting NMTRAN > NMtran failed. There is no output for model 1. Contents of FMSG: > Not restarting this model. > F:1 .. > execute done > > (5) similar to (1) but the status/error code became 107 > > None of the above has led to a successful NONMEM run. But the above command > lines work when outside R (i.e. through `cmd` +/- PsN) > Is there anyone experiencing the same issue? > > System/software info: > OS: Windows 10 > NONMEM v7.4 > R3.4.2 > Rstudio v1.1.383 > > Best regards, > Matthew Hui > PhD Student > School of Pharmacy > Faculty of Medicine > The Chinese University of Hong Kong >