kevinrr888 commented on code in PR #28:
URL: 
https://github.com/apache/accumulo-classloaders/pull/28#discussion_r2456268695


##########
modules/classloaders/hdfs-class-loader/src/main/java/org/apache/accumulo/classloader/hdfs/HDFSContextClassLoaderFactory.java:
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@@ -0,0 +1,402 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   https://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+package org.apache.accumulo.classloader.hdfs;
+
+import java.io.ByteArrayInputStream;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.net.URL;
+import java.net.URLClassLoader;
+import java.nio.charset.StandardCharsets;
+import java.nio.file.Files;
+import java.security.MessageDigest;
+import java.security.NoSuchAlgorithmException;
+import java.util.List;
+import java.util.UUID;
+import java.util.concurrent.ExecutionException;
+import java.util.concurrent.TimeUnit;
+import java.util.concurrent.atomic.AtomicBoolean;
+
+import org.apache.accumulo.core.spi.common.ContextClassLoaderEnvironment;
+import org.apache.accumulo.core.spi.common.ContextClassLoaderFactory;
+import org.apache.accumulo.core.util.Pair;
+import org.apache.accumulo.core.util.Retry;
+import org.apache.commons.io.FileUtils;
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.fs.FileSystem;
+import org.apache.hadoop.fs.Path;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.google.common.annotations.VisibleForTesting;
+import com.google.common.cache.Cache;
+import com.google.common.cache.CacheBuilder;
+import com.google.gson.Gson;
+
+import edu.umd.cs.findbugs.annotations.SuppressFBWarnings;
+
+/**
+ * A {@link ContextClassLoaderFactory} implementation which uses a {@link 
URLClassLoader} per
+ * defined context. To use this class, need to set the Accumulo configuration 
property
+ * <b>general.context.class.loader.factory</b> to the fully qualified name of 
this class. <br>
+ * <br>
+ * Configuration of this class is done by having a base directory in HDFS 
which stores context
+ * directories (e.g., "hdfs://test:1234/contexts" could be the base directory) 
and where the
+ * children are specific contexts (e.g., contextA, contextB). The "contexts" 
directory should not
+ * contain any other files or directories. Each context directory should 
contain a manifest file
+ * <b>manifest.json</b> and JAR files. The manifest file defines the context 
name and the JAR info
+ * for what JARs should be in the {@link URLClassLoader} for that context. For 
example:
+ *
+ * <pre>
+ * {
+ *   "context": "contextA",
+ *   "jars": [
+ *     {
+ *       "name": "Iterators.jar",
+ *       "checksum": 
"f2ca1bb6c7e907d06dafe4687e579fce76b37e4e93b7605022da52e6ccc26fd2"
+ *     },
+ *     {
+ *       "name": "IteratorsV2.jar",
+ *       "checksum": 
"934ee77f70dc82403618c154aa63af6f4ebbe3ac1eaf22df21e7e64f0fb6643d"
+ *     }
+ *   ]
+ * }
+ * </pre>
+ *
+ * Two system properties need to be set to use this class: <br>
+ * <b>hdfs.contexts.class.loader.base.dir</b> <br>
+ * This defines where the context directories exist within HDFS (e.g., 
"hdfs://test:1234/contexts"
+ * in our example) <br>
+ * <b>local.contexts.class.loader.download.dir</b> <br>
+ * This defines where the context info will be locally downloaded to. Will 
only download the JARs.
+ * For example, if set to "/path/to/contexts" and
+ * {@link HDFSContextClassLoaderFactory#getClassLoader(String)} is called with 
the argument
+ * "contextA", will create the local directory "/path/to/contexts/contextA" 
(note that all parent
+ * directories will be created if needed), will download the JARs 
Iterators.jar and IteratorsV2.jar
+ * from HDFS to the contextA directory. The {@link URLClassLoader} will be 
constructed from these
+ * local JARs, will be associated with "contextA", and will be cached. <br>
+ * Another optional system property: <br>
+ * <b>manifest.file.check.interval.sec</b> <br>
+ * may be set as well. This defines how often (in sec) the cached contexts 
will be checked and/or
+ * updated based on changes to their associated manifest file. If not set, 
default interval is 10s.
+ * Changes to this will take effect on next interval.
+ */
+public class HDFSContextClassLoaderFactory implements 
ContextClassLoaderFactory {
+  private static final Logger LOG = 
LoggerFactory.getLogger(HDFSContextClassLoaderFactory.class);
+  public static final String MANIFEST_FILE_NAME = "manifest.json";
+  private static final String HASH_ALG = "SHA-256";
+  private static final long DEFAULT_MANIFEST_CHECK_INTERVAL = 
TimeUnit.SECONDS.toMillis(10);
+  public static final String HDFS_CONTEXTS_BASE_DIR = 
"hdfs.contexts.class.loader.base.dir";
+  public static final String LOCAL_CONTEXTS_DOWNLOAD_DIR =
+      "local.contexts.class.loader.download.dir";
+  public static final String MANIFEST_FILE_CHECK_INTERVAL = 
"manifest.file.check.interval.sec";
+  // Cache the class loaders for re-use
+  // WeakReferences are used so that the class loaders can be cleaned up when 
no longer needed
+  // Classes that are loaded contain a reference to the class loader used to 
load them
+  // so the class loader will be garbage collected when no more classes are 
loaded that reference it
+  private final Cache<Path,Pair<String,URLClassLoader>> classLoaders =
+      CacheBuilder.newBuilder().weakValues().build();
+  private FileSystem hdfs;
+  private Path HDFSContextsDir;
+  private java.nio.file.Path localContextsDir;
+  private final Configuration hadoopConf = new Configuration();
+  private final Thread manifestFileChecker = new Thread(new 
ManifestFileChecker());
+  private final AtomicBoolean shutdownManifestFileChecker = new 
AtomicBoolean(false);
+
+  @VisibleForTesting
+  public class ManifestFileChecker implements Runnable {
+    @Override
+    public void run() {
+      while (!shutdownManifestFileChecker.get()) {
+        var manifestFileCheckInterval = 
System.getProperty(MANIFEST_FILE_CHECK_INTERVAL);
+        long sleepTime = manifestFileCheckInterval == null ? 
DEFAULT_MANIFEST_CHECK_INTERVAL
+            : 
TimeUnit.SECONDS.toMillis(Integer.parseInt(manifestFileCheckInterval));
+
+        classLoaders.asMap().keySet().forEach(HDFSManifestFile -> 
classLoaders.asMap()
+            .computeIfPresent(HDFSManifestFile, (key, existingVal) -> {
+              var existingChecksum = existingVal.getFirst();
+              try (var HDFSManifestFileIn = hdfs.open(HDFSManifestFile)) {
+                var HDFSManifestFileBytes = HDFSManifestFileIn.readAllBytes();
+                var computedChecksum = checksum(HDFSManifestFileBytes);
+                if (!existingChecksum.equals(computedChecksum)) {
+                  // This manifest file has changed since the class loader for 
it was computed.
+                  // Need to update the class loader entry.
+                  LOG.debug("HDFS manifest file {} existing checksum {} 
computed checksum {}",
+                      HDFSManifestFile, existingChecksum, computedChecksum);
+                  try (var tempState =
+                      createTempState(HDFSManifestFile.getParent().getName(), 
HDFSManifestFile,
+                          new ByteArrayInputStream(HDFSManifestFileBytes), 
computedChecksum)) {
+                    return createClassLoader(tempState);
+                  }
+                }
+              } catch (IOException | ContextClassLoaderException | 
ExecutionException e) {
+                LOG.error("Exception occurred in thread {}", 
Thread.currentThread().getName(), e);
+              }
+              return existingVal;
+            }));
+
+        try {
+          Thread.sleep(sleepTime);
+        } catch (InterruptedException e) {
+          Thread.currentThread().interrupt();
+          throw new IllegalStateException(e);
+        }
+      }
+    }
+  }
+
+  /**
+   * Used to store info needed to create the value in the Cache
+   */
+  private static class TempState implements AutoCloseable {
+    private final String contextName;
+    private final java.nio.file.Path tempPath;
+    private final java.nio.file.Path finalPath;
+    private final String checksum;
+    private final URL[] urls;
+
+    private TempState(String contextName, java.nio.file.Path tempPath, 
java.nio.file.Path finalPath,
+        String checksum, URL[] urls) {
+      this.contextName = contextName;
+      this.tempPath = tempPath;
+      this.finalPath = finalPath;
+      this.checksum = checksum;
+      this.urls = urls;
+    }
+
+    @Override
+    public void close() throws IOException {
+      if (tempPath.toFile().exists()) {
+        FileUtils.deleteDirectory(tempPath.toFile());
+        LOG.debug("Creating the class loader for context {} did not fully 
complete. Deleted the "
+            + "temp directory {} and all of its contents.", contextName, 
tempPath);
+      }
+    }
+  }
+
+  @VisibleForTesting
+  public void shutdownManifestFileChecker() {
+    shutdownManifestFileChecker.set(true);
+  }
+
+  @VisibleForTesting
+  public static class Context {
+    private final String contextName;
+    private final List<JarInfo> jars;
+
+    public Context(String contextName, JarInfo... jars) {
+      this.contextName = contextName;
+      this.jars = List.of(jars);
+    }
+
+    public String getContextName() {
+      return contextName;
+    }
+
+    @SuppressFBWarnings(value = "EI_EXPOSE_REP", justification = "returned 
list is not modifiable")
+    public List<JarInfo> getJars() {
+      return jars;
+    }
+  }
+
+  @VisibleForTesting
+  public static class JarInfo {
+    private final String jarName;
+    private final String checksum;
+
+    public JarInfo(String jarName, String checksum) {
+      this.jarName = jarName;
+      this.checksum = checksum;
+    }
+
+    public String getJarName() {
+      return jarName;
+    }
+
+    public String getChecksum() {
+      return checksum;
+    }
+  }
+
+  @Override
+  public void init(ContextClassLoaderEnvironment env) {
+    HDFSContextsDir = new Path(System.getProperty(HDFS_CONTEXTS_BASE_DIR));
+    localContextsDir = 
java.nio.file.Path.of(System.getProperty(LOCAL_CONTEXTS_DOWNLOAD_DIR));
+    // create the directory to store all the context info, if needed
+    if (localContextsDir.toFile().mkdirs()) {
+      LOG.info("Created dir(s) " + localContextsDir);
+    }
+    try {
+      hdfs = FileSystem.get(HDFSContextsDir.toUri(), hadoopConf);
+    } catch (IOException e) {
+      throw new IllegalStateException("could not obtain FileSystem for " + 
HDFSContextsDir.toUri(),
+          e);
+    }
+    manifestFileChecker.start();
+  }
+
+  private TempState createTempState(String contextName, Path HDFSManifestFile,
+      InputStream HDFSManifestFileIn, String HDFSManifestFileChecksum)
+      throws IOException, ContextClassLoaderException, ExecutionException {
+    URL[] urls;
+
+    var localFinalContextDir = localContextsDir.resolve(contextName);
+    // create the temp directory, will eventually be renamed to the above or 
deleted
+    var localTempContextDir =
+        localContextsDir.resolve("tmp-" + contextName + "-" + 
UUID.randomUUID());
+
+    if (localTempContextDir.toFile().mkdir()) {
+      LOG.debug("Created dir " + localTempContextDir);
+    } else {
+      throw new IOException("Could not create dir " + localTempContextDir);
+    }
+
+    // read the context info from the HDFS manifest file and download the jars 
referenced to the
+    // temp directory in the local file system
+    try (var reader = new InputStreamReader(HDFSManifestFileIn, 
StandardCharsets.UTF_8)) {
+      Context context = new Gson().fromJson(reader, Context.class);
+      urls = new URL[context.getJars().size()];
+      int i = 0;
+      if (HDFSManifestFile.getParent() != null) {
+        for (var jar : context.getJars()) {
+          // download to temp dir
+          var HDFSJarPath = new Path(HDFSManifestFile.getParent(), 
jar.getJarName());
+          var localTempJarPath = localTempContextDir.resolve(jar.getJarName());
+          hdfs.copyToLocalFile(HDFSJarPath, new 
Path(localTempJarPath.toUri()));
+          LOG.info("Copied from {} to {}", HDFSJarPath, localTempJarPath);
+          // verify downloaded jar checksum matches what is in the manifest 
file
+          var computedChecksumLocalJar = checksumLocalFile(localTempJarPath);
+          if (!computedChecksumLocalJar.equals(jar.getChecksum())) {
+            throw new ContextClassLoaderException(contextName,
+                new IllegalStateException(String.format(
+                    "checksum: %s of downloaded jar: %s (downloaded from %s to 
%s) did not match "
+                        + "checksum present: %s in manifest file: %s. Consider 
retrying and/or "
+                        + "updating the checksum for this jar in the manifest 
file",
+                    computedChecksumLocalJar, jar.getJarName(), HDFSJarPath, 
localTempJarPath,
+                    jar.getChecksum(), HDFSManifestFile)));
+          }
+          // use final (non-temp) jar path for the URL as that is what will 
exist if this op
+          // completes
+          var localFinalJarPath = 
localFinalContextDir.resolve(jar.getJarName());
+          urls[i++] = localFinalJarPath.toUri().toURL();
+        }
+      } else {
+        throw new ContextClassLoaderException(contextName);
+      }
+    }
+
+    return new TempState(contextName, localTempContextDir, 
localFinalContextDir,
+        HDFSManifestFileChecksum, urls);
+  }
+
+  private Pair<String,URLClassLoader> createClassLoader(TempState tempState) 
throws IOException {
+    // if the final path already exists, we are replacing it with temp path, 
so recursively delete
+    // the final path
+    if (Files.exists(tempState.finalPath)) {
+      FileUtils.deleteDirectory(tempState.finalPath.toFile());
+    }
+    // rename temp path to final path
+    if (tempState.tempPath.toFile().renameTo(tempState.finalPath.toFile())) {
+      LOG.info("Renamed {} to {}", tempState.tempPath, tempState.finalPath);
+    }
+    var classLoader = new URLClassLoader(tempState.urls, 
ClassLoader.getSystemClassLoader());
+    return new Pair<>(tempState.checksum, classLoader);
+  }
+
+  public String checksumLocalFile(java.nio.file.Path path) throws IOException {
+    try (var in = FileUtils.openInputStream(path.toFile())) {
+      return checksum(in.readAllBytes());
+    }
+  }
+
+  public static String checksum(byte[] fileBytes) {
+    try {
+      StringBuilder checksum = new StringBuilder();
+      for (byte b : MessageDigest.getInstance(HASH_ALG).digest(fileBytes)) {
+        checksum.append(String.format("%02x", b));
+      }
+      return checksum.toString();
+    } catch (NoSuchAlgorithmException e) {
+      throw new IllegalStateException(e);
+    }
+  }
+
+  @Override
+  public ClassLoader getClassLoader(String contextName) throws 
ContextClassLoaderException {
+    Path HDFSContextPath = new Path(HDFSContextsDir, contextName);
+    Path HDFSManifestFile = new Path(HDFSContextPath, MANIFEST_FILE_NAME);
+
+    try (var HDFSManifestFileIn = hdfs.open(HDFSManifestFile)) {
+      // if another thread has already started creating the class loader for 
this context:
+      // wait a short time for it to succeed in creating and caching the 
classloader, otherwise
+      // continue and try to create and cache the classloader ourselves (only 
one result will be
+      // cached)
+      try (var allContextDirs = Files.list(localContextsDir)) {
+        // will match temp directories or final directories for this context 
name
+        if (allContextDirs.map(java.nio.file.Path::getFileName)
+            .anyMatch(path -> path.toString().contains(contextName))) {
+          var retry = Retry.builder().maxRetries(5).retryAfter(50, 
TimeUnit.MILLISECONDS)
+              .incrementBy(50, TimeUnit.MILLISECONDS).maxWait(1, 
TimeUnit.SECONDS).backOffFactor(2)
+              .logInterval(500, TimeUnit.MILLISECONDS).createRetry();
+          final String operationDesc =
+              "Waiting for another thread to finish creating/caching the class 
loader for context "
+                  + contextName;
+          Pair<String,URLClassLoader> valInCache;
+          while ((valInCache = classLoaders.getIfPresent(HDFSManifestFile)) == 
null
+              && retry.canRetry()) {
+            retry.useRetry();
+            try {
+              retry.waitForNextAttempt(LOG, operationDesc);
+            } catch (InterruptedException e) {
+              Thread.currentThread().interrupt();
+              throw new IllegalStateException(e);
+            }
+          }
+
+          if (valInCache != null) {
+            retry.logCompletion(LOG, operationDesc);
+            return valInCache.getSecond();
+          } else {
+            LOG.debug(
+                "Operation '" + operationDesc + "' has not yet succeeded. 
Attempting ourselves.");
+          }
+        }
+      }
+
+      var HDFSManifestFileBytes = HDFSManifestFileIn.readAllBytes();
+      try (var tempState = createTempState(contextName, HDFSManifestFile,

Review Comment:
   I split these into two to allow multiple threads to attempt the creation at 
the same time for calls to getClassLoader() with the same context. Note that we 
only perform synchronization on the cache for createClassLoader(). 
createTempState() is called outside of this, which does most of the work:
   ```
         try (var tempState = createTempState(...)) {
           // atomically return stored value if it exists OR rename the temp 
dir to the final dir and
           // create and store the new class loader
           return classLoaders.computeIfAbsent(hdfsManifestFile, key -> {
             try {
               ...createClassLoader(tempState);...
             } catch (IOException e) {
               throw new IllegalStateException(e);
             }
           }).getClassLoader();
         }
   ```



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