See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/408/changes>
Changes: [swu] stuff to get negation (annotation) tests running. a few changes in AssertionConst default locations ------------------------------------------ Aug 28, 2013 5:32:34 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Aug 28, 2013 5:32:34 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 28, 2013 5:32:34 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: Building Apache cTAKES Assertion 3.1.0-SNAPSHOT Aug 28, 2013 5:32:34 PM org.apache.maven.cli.event.ExecutionEventLogger projectStarted INFO: ------------------------------------------------------------------------ Aug 28, 2013 5:32:34 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 28, 2013 5:32:34 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-assertion --- [INFO] Deleting <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/target> Aug 28, 2013 5:32:35 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 28, 2013 5:32:35 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-assertion --- Aug 28, 2013 5:32:35 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 28, 2013 5:32:35 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-assertion --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources Aug 28, 2013 5:32:35 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 28, 2013 5:32:35 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- jcasgen-maven-plugin:0.9.3:generate (default) @ ctakes-assertion --- [INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/target/generated-sources/jcasgen'> [INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/resources/org/apache/ctakes/assertion/types/TypeSystem.xml'.> [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.medfacts.types.Assertion'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.medfacts.types.Assertion_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.medfacts.types.Concept'. [INFO] JCasGen: Creating: 'org.apache.ctakes.assertion.medfacts.types.Concept_Type'. Aug 28, 2013 5:32:36 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: Aug 28, 2013 5:32:36 PM org.apache.maven.cli.event.ExecutionEventLogger mojoStarted INFO: --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-assertion --- [INFO] Compiling 84 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/TrainAssertionModel.java>:[41,29] [deprecation] org.cleartk.classifier.CleartkAnnotatorDescriptionFactory in org.cleartk.classifier has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/TrainAssertionModel.java>:[45,37] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/TrainAssertionModel.java>:[46,37] [deprecation] org.cleartk.classifier.opennlp.MaxentDataWriter in org.cleartk.classifier.opennlp has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/SubjectCleartkAnalysisEngine.java>:[36,47] [deprecation] org.cleartk.classifier.feature.extractor.ContextExtractor in org.cleartk.classifier.feature.extractor has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/CreateAssertionDescriptor.java>:[21,37] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionSampleFeatureGenerator.java>:[8,54] [deprecation] org.cleartk.classifier.feature.extractor.simple.SpannedTextExtractor in org.cleartk.classifier.feature.extractor.simple has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionSampleFeatureGenerator.java>:[9,49] [deprecation] org.cleartk.classifier.feature.proliferate.CapitalTypeProliferator in org.cleartk.classifier.feature.proliferate has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionSampleFeatureGenerator.java>:[10,49] [deprecation] org.cleartk.classifier.feature.proliferate.CharacterNGramProliferator in org.cleartk.classifier.feature.proliferate has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionSampleFeatureGenerator.java>:[11,49] [deprecation] org.cleartk.classifier.feature.proliferate.LowerCaseProliferator in org.cleartk.classifier.feature.proliferate has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionSampleFeatureGenerator.java>:[12,49] [deprecation] org.cleartk.classifier.feature.proliferate.NumericTypeProliferator in org.cleartk.classifier.feature.proliferate has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AssertionSampleFeatureGenerator.java>:[13,49] [deprecation] org.cleartk.classifier.feature.proliferate.ProliferatingExtractor in org.cleartk.classifier.feature.proliferate has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[370,55] [unchecked] unchecked call to addAll(org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact<OUTCOME_TYPE>) as a member of the raw type org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[559,53] readMiPACQ(java.io.File,java.io.File,java.io.File,java.io.File) in org.apache.ctakes.assertion.pipelines.GoldEntityAndAttributeReaderPipelineForSeedCorpus cannot be applied to (java.io.File,java.io.File) [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[935,24] [unchecked] unchecked call to <ANNOTATION_TYPE,SPAN_TYPE>add(java.util.Collection<? extends ANNOTATION_TYPE>,java.util.Collection<? extends ANNOTATION_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,SPAN_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,OUTCOME_TYPE>) as a member of the raw type org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[945,27] [unchecked] unchecked call to <ANNOTATION_TYPE,SPAN_TYPE>add(java.util.Collection<? extends ANNOTATION_TYPE>,java.util.Collection<? extends ANNOTATION_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,SPAN_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,OUTCOME_TYPE>) as a member of the raw type org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[955,27] [unchecked] unchecked call to <ANNOTATION_TYPE,SPAN_TYPE>add(java.util.Collection<? extends ANNOTATION_TYPE>,java.util.Collection<? extends ANNOTATION_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,SPAN_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,OUTCOME_TYPE>) as a member of the raw type org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[965,23] [unchecked] unchecked call to <ANNOTATION_TYPE,SPAN_TYPE>add(java.util.Collection<? extends ANNOTATION_TYPE>,java.util.Collection<? extends ANNOTATION_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,SPAN_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,OUTCOME_TYPE>) as a member of the raw type org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[975,23] [unchecked] unchecked call to <ANNOTATION_TYPE,SPAN_TYPE>add(java.util.Collection<? extends ANNOTATION_TYPE>,java.util.Collection<? extends ANNOTATION_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,SPAN_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,OUTCOME_TYPE>) as a member of the raw type org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[986,23] [unchecked] unchecked call to <ANNOTATION_TYPE,SPAN_TYPE>add(java.util.Collection<? extends ANNOTATION_TYPE>,java.util.Collection<? extends ANNOTATION_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,SPAN_TYPE>,com.google.common.base.Function<ANNOTATION_TYPE,OUTCOME_TYPE>) as a member of the raw type org.apache.ctakes.assertion.eval.AnnotationStatisticsCompact [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/eval/AssertionEvaluation.java>:[1054,24] [unchecked] unchecked call to write(org.cleartk.classifier.Instance<OUTCOME_TYPE>) as a member of the raw type org.cleartk.classifier.DataWriter [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/extractors/TreeFragmentFeatureExtractor.java>:[59,41] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/extractors/TreeFragmentFeatureExtractor.java>:[68,31] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/TrainAssertionModel.java>:[291,72] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/extractors/ContextWordWindowExtractor.java>:[38,30] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/cr/XmiCollectionReaderCtakes.java>:[81,18] [unchecked] unchecked call to add(E) as a member of the raw type java.util.ArrayList [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/AlternateCuePhraseAnnotator.java>:[42,25] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/pipelines/RunJudgeAttributeInstances.java>:[90,35] [unchecked] unchecked conversion found : java.util.List required: java.util.List<java.io.File> [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/CreateAssertionDescriptor.java>:[33,90] [deprecation] org.cleartk.classifier.opennlp.DefaultMaxentDataWriterFactory in org.cleartk.classifier.opennlp has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/medfacts/CasIndexer.java>:[74,21] [unchecked] unchecked cast found : org.apache.uima.jcas.tcas.Annotation required: T [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-assertion/ws/src/main/java/org/apache/ctakes/assertion/pipelines/GenerateTreeRepresentation.java>:[86,41] [deprecation] locateFile(java.lang.String) in org.apache.ctakes.core.resource.FileLocator has been deprecated [INFO] 30 errors [INFO] -------------------------------------------------------------
