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https://issues.apache.org/jira/browse/CTAKES-279?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13884562#comment-13884562
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James Joseph Masanz commented on CTAKES-279:
--------------------------------------------
this was caused by a \r (carriage return) character appearing within the text
(not immediately prior to a \n)
this caused part of assertion to think there were 7 tokens on a line and part
to think there were fewer (stopping before the \r)
> ArrayIndexOutOfBoundsException: 7
> generateFeatures(SingleDocumentProcessor.java:274)
> ------------------------------------------------------------------------------------
>
> Key: CTAKES-279
> URL: https://issues.apache.org/jira/browse/CTAKES-279
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-assertion
> Affects Versions: 3.1.1
> Environment: using AggregatePlaintextUMLSProcessor within cTAKES 3.1.1
> Reporter: James Joseph Masanz
>
> I can't post the data that caused this, but I've hit this exception 3 times.
> I will debug and post more. Here's part of the stack trace. I am using
> AggregatePlaintextUMLSProcessor within cTAKES 3.1.1
> Caused by: java.lang.ArrayIndexOutOfBoundsException: 7
> at
> org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.generateFeatures(SingleDocumentProcessor.java:274)
> at
> org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.processSingleDocument(SingleDocumentProcessor.java:102)
> at
> org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine.process(AssertionAnalysisEngine.java:210)
> at
> org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
> ... 14 more
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