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https://issues.apache.org/jira/browse/CTAKES-288?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13942082#comment-13942082
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ASF subversion and git services commented on CTAKES-288:
--------------------------------------------------------
Commit 1579699 from [email protected] in branch 'ctakes/trunk'
[ https://svn.apache.org/r1579699 ]
first part of fix for CTAKES-288
> Severity not set for DiseaseDisorderMention
> -------------------------------------------
>
> Key: CTAKES-288
> URL: https://issues.apache.org/jira/browse/CTAKES-288
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-relation-extractor, ctakes-template-filler
> Affects Versions: 3.1.1
> Reporter: Pei Chen
> Assignee: James Joseph Masanz
> Priority: Minor
> Fix For: 3.1.2
>
>
> >
> > If I'm reading this logic correctly, it will only populate severity for
> > SignSymptomMention.... Can't think of why not to populate it if it exists
> > in
> > the BinaryTextRelations-
> > have you tried adding: ddm.setSeverity(degreeOfTextRelation); instead
> > of logging the error ???
> >
> > if (eventMention instanceof
> > DiseaseDisorderMention) {
> > DiseaseDisorderMention ddm =
> > (DiseaseDisorderMention) eventMention;
> > logger.error("Need to implement attr
> > for " + relation + " for
> > DiseaseDisorderMention");
> > } else if (eventMention instanceof
> > SignSymptomMention) {
> > SignSymptomMention ssm =
> > (SignSymptomMention) eventMention;
> >
> > ssm.setSeverity(degreeOfTextRelation);
> >
> > Would you mind
> > > > > Hi,
> > > > >
> > > > > I am trying to output the relations associated with
> > > > DiseaseDisorderMentions
> > > > > and other types. But I want to start by iterating over
> > > > > DiseaseDisorderMention, not BinaryTextRelations since I want to
> > > > > be sure
> > > > to
> > > > > find them all, even if they have no associated relation.
> > > > >
> > > > > I always get null when using any of the getters like
> > > > > "getSeverity()". I
> > > > am
> > > > > using the example text "He had a slight fracture in the proximal
> > > > > right
> > > > fibula".
> > > > > When I iterate over BinaryTextRelations, I see the following
> > > > > valid
> > > > values:
> > > > > BinaryTextRelation slightFracture = iterator.next();
> > > > > slightFracture.getArg1().getArgument().getCoveredText() is "fracture"
> > > > > slightFracture.getArg2().getArgument().getCoveredText() is "slight".
> > > > > However, for the "fracture" DiseaseDisorderMention,
> > > > > getSeverity() is
> > > > null.
> > > > > If it wasn't, I would then grab
> > > > > disease.getSeverity().getArg1().getArgument().getCoveredText(),
> > > > > or for Arg2.
> > > > >
> > > > > Thanks,
> > > > > Chase
> > > >
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