[
https://issues.apache.org/jira/browse/CTAKES-347?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14301577#comment-14301577
]
Pei Chen commented on CTAKES-347:
---------------------------------
Thanks Weiwei Zhang for the stacktrace:
Stacktrace:
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p
%c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
02 Feb 2015 09:50:51 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg
with config file =
/usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/lvg/data/config/lvg.properties
02 Feb 2015 09:50:51 INFO LvgCmdApiResourceImpl - config file absolute path
=
/usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/lvg/data/config/lvg.properties
02 Feb 2015 09:50:51 INFO LvgCmdApiResourceImpl - cwd =
/usr/local/apache-ctakes-3.2.0
02 Feb 2015 09:50:51 INFO LvgCmdApiResourceImpl - cd
/usr/local/apache-ctakes-3.2.0/resources/org/apache/ctakes/lvg/
02 Feb 2015 09:50:53 INFO LvgCmdApiResourceImpl - cd
/usr/local/apache-ctakes-3.2.0
org.apache.uima.resource.ResourceInitializationException: Initialization of CAS
Processor with name "AggregateCdaProcessor" failed.
at
org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:83)
at
org.apache.uima.impl.UIMAFramework_impl._produceCollectionProcessingEngine(UIMAFramework_impl.java:420)
at
org.apache.uima.UIMAFramework.produceCollectionProcessingEngine(UIMAFramework.java:864)
at org.apache.uima.tools.cpm.CpmPanel.startProcessing(CpmPanel.java:573)
at org.apache.uima.tools.cpm.CpmPanel.access$000(CpmPanel.java:105)
at org.apache.uima.tools.cpm.CpmPanel$1.run(CpmPanel.java:713)
Caused by: org.apache.uima.resource.ResourceConfigurationException:
Initialization of CAS Processor with name "AggregateCdaProcessor" failed.
at
org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1104)
at
org.apache.uima.collection.impl.cpm.container.CPEFactory.getCasProcessors(CPEFactory.java:550)
at org.apache.uima.collection.impl.cpm.BaseCPMImpl.init(BaseCPMImpl.java:253)
at org.apache.uima.collection.impl.cpm.BaseCPMImpl.<init>(BaseCPMImpl.java:127)
at
org.apache.uima.collection.impl.CollectionProcessingEngine_impl.initialize(CollectionProcessingEngine_impl.java:75)
... 5 more
Caused by: java.lang.IllegalArgumentException: URI is not hierarchical
at java.io.File.<init>(File.java:418)
at
org.apache.ctakes.core.resource.FileResourceImpl.load(FileResourceImpl.java:44)
at
org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:603)
at
org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:442)
at
org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:153)
at
org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:123)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:314)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:425)
at
org.apache.uima.collection.impl.cpm.container.CPEFactory.produceIntegratedCasProcessor(CPEFactory.java:1088)
... 9 more
> AggregateCdaProcessor fails with URI is not hierarchical
> --------------------------------------------------------
>
> Key: CTAKES-347
> URL: https://issues.apache.org/jira/browse/CTAKES-347
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-clinical-pipeline
> Affects Versions: 3.2.1
> Reporter: Pei Chen
> Fix For: 3.2.2
>
>
> Currently configured to attempt to use physical file:/// instead of using
> classpath.
> http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-
> preprocessor/desc/CdaCasInitializer.xml
--
This message was sent by Atlassian JIRA
(v6.3.4#6332)
