See <https://builds.apache.org/job/ctakes-trunk-compiletest/715/changes>
Changes: [clin] referring to the fast dictionary lookup, and mallet in the temporal pom file ------------------------------------------ [...truncated 10905 lines...] [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.ProcedureMethodModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RangeAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.RomanNumeralAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticArgument_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SemanticRoleRelation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SeverityModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.SubjectModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.TimeMention_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textsem.UncertaintyModifier_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.List_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.LookupWindowAnnotation_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Paragraph_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Segment_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.textspan.Sentence_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pair_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.Pairs_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.typesystem.type.util.ProbabilityDistribution_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.Date_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.DocKey_Type'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair'. [INFO] JCasGen: Replacing: 'org.apache.ctakes.ytex.uima.types.KeyValuePair_Type'. [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-ytex-uima --- [INFO] Compiling 322 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/classes> [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-ytex-uima --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-ytex-uima --- [INFO] Compiling 11 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/target/test-classes> [WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-ytex-uima/src/test/java/org/apache/ctakes/ytex/uima/annotators/SenseDisambiguatorAnnotatorTest.java>:[89,15] [unchecked] unchecked conversion [INFO] [INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-ytex-uima --- [INFO] Tests are skipped. [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES ctakes-clinical-pipeline 3.2.3-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-clinical-pipeline --- [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources> [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline --- [INFO] Compiling 5 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/classes> [WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/runtime/BagOfAnnotationsGenerator.java>:[92,55] [unchecked] unchecked cast [WARNING] required: Class<T> found: Type where T is a type-variable: T extends Annotation declared in class BagOfAnnotationsGenerator <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ae/ExtractionPrepAnnotator.java>:[152,23] [unchecked] unchecked call to add(E) as a member of the raw type Set [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-clinical-pipeline --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-clinical-pipeline --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/main/resources> [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-clinical-pipeline --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-clinical-pipeline --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/src/test/resources> [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-clinical-pipeline --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-clinical-pipeline --- [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-clinical-pipeline/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES Temporal Information Extraction 3.2.3-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://repository.apache.org/snapshots/org/cleartk/cleartk-ml-mallet/2.0.1-SNAPSHOT/maven-metadata.xml Downloading: http://repository.apache.org/snapshots/org/cleartk/cleartk-ml-mallet/2.0.1-SNAPSHOT/cleartk-ml-mallet-2.0.1-SNAPSHOT.pom [WARNING] The POM for org.cleartk:cleartk-ml-mallet:jar:2.0.1-SNAPSHOT is missing, no dependency information available Downloading: http://repository.apache.org/snapshots/org/cleartk/cleartk-ml-mallet/2.0.1-SNAPSHOT/cleartk-ml-mallet-2.0.1-SNAPSHOT.jar [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [2.302s] [INFO] Apache cTAKES common type system .................. SUCCESS [8.421s] [INFO] Apache cTAKES utils ............................... SUCCESS [2.441s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [0.844s] [INFO] Apache cTAKES core ................................ SUCCESS [13.798s] [INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.772s] [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [3.928s] [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [0.775s] [INFO] Apache cTAKES chunker ............................. SUCCESS [1.712s] [INFO] Apache cTAKES document preprocessor ............... SUCCESS [2.296s] [INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [11.042s] [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [2.988s] [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.345s] [INFO] Apache cTAKES Resources lvg ....................... SUCCESS [27.788s] [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [3.619s] [INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.854s] [INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.082s] [INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [1.154s] [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.537s] [INFO] Apache cTAKES Resources coreference ............... SUCCESS [0.962s] [INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.907s] [INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [1.344s] [INFO] Apache cTAKES Dependency Parser ................... SUCCESS [32.851s] [INFO] Apache cTAKES Relation Extractor .................. SUCCESS [9.552s] [INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [5.494s] [INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [1.617s] [INFO] Apache cTAKES Drug NER ............................ SUCCESS [5.722s] [INFO] Apache cTAKES Resources side-effect ............... SUCCESS [1.034s] [INFO] Apache cTAKES Side Effects ........................ SUCCESS [6.868s] [INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.986s] [INFO] Apache cTAKES Smoking Status ...................... SUCCESS [6.862s] [INFO] Apache cTAKES Resources assertion ................. SUCCESS [0.941s] [INFO] Apache cTAKES Assertion ........................... SUCCESS [6.768s] [INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.283s] [INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.110s] [INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.124s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [2.083s] [INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [8.906s] [INFO] Apache cTAKES Resources ctakes-ytex-res ........... SUCCESS [1.304s] [INFO] Apache cTAKES YTEX ................................ SUCCESS [8.501s] [INFO] Apache cTAKES YTEX UIMA ........................... SUCCESS [7.732s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [6.353s] [INFO] Apache cTAKES Temporal Information Extraction ..... FAILURE [6.139s] [INFO] Apache cTAKES YTEX Web ............................ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ctakes-examples ................................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 4:05.805s [INFO] Finished at: Mon Sep 28 21:27:33 UTC 2015 [INFO] Final Memory: 81M/379M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data [ERROR] Failed to execute goal on project ctakes-temporal: Could not resolve dependencies for project org.apache.ctakes:ctakes-temporal:jar:3.2.3-SNAPSHOT: Could not find artifact org.cleartk:cleartk-ml-mallet:jar:2.0.1-SNAPSHOT in Nexus (http://repository.apache.org/snapshots) -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-temporal Sending e-mails to: [email protected] [email protected] channel stopped
