See
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/812/>
------------------------------------------
[...truncated 325 lines...]
[WARNING] where T is a type-variable:
T extends Annotation declared in class CombinedExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[87,55]
[unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as
a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[96,3]
[unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as
a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[94,42]
[unchecked] unchecked call to
CleartkExtractor(Class<SEARCH_T>,FeatureExtractor1<SEARCH_T>,Context...) as a
member of the raw type CleartkExtractor
[WARNING] where SEARCH_T is a type-variable:
SEARCH_T extends Annotation declared in class CleartkExtractor
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[107,44]
[unchecked] unchecked call to DistanceExtractor(String,Class<? extends
Annotation>) as a member of the raw type DistanceExtractor
[WARNING]
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[154,57]
[unchecked] unchecked call to extract(JCas,T) as a member of the raw type
FeatureExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in interface FeatureExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[154,18]
[unchecked] unchecked method invocation: method addAll in interface List is
applied to given types
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[154,57]
[unchecked] unchecked conversion
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/MultiTokenFeaturesExtractor.java>:[156,53]
[unchecked] unchecked call to extractBetween(JCas,FOCUS_T,FOCUS_T) as a member
of the raw type CleartkExtractor
[INFO]
[INFO] --- maven-dependency-plugin:2.8:unpack (unpack) @ ctakes-temporal ---
[INFO] Configured Artifact:
net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.1:jar
[INFO] ctakes-resources-umls2011ab-3.1.1.jar already unpacked.
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @
ctakes-temporal ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @
ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 7 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @
ctakes-temporal ---
[INFO] Compiling 2 source files to
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @
ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @
ctakes-temporal ---
[INFO] Compiling 6 source files to
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/test-classes>
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal
---
[INFO] Surefire report directory:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.temporal.ae.EventTimeRelationAnnotatorTest
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p
%c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
27 Jun 2016 17:34:39 INFO ClearNLPDependencyParserAE - using Morphy analysis?
true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
27 Jun 2016 17:35:00 INFO ContextDependentTokenizerAnnotator - Finite state
machines loaded.
27 Jun 2016 17:35:00 INFO SentenceDetector - Sentence detector model file:
org/apache/ctakes/core/sentdetect/sd-med-model.zip
27 Jun 2016 17:35:01 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg
with config file = /tmp/lvg.properties
27 Jun 2016 17:35:01 INFO LvgCmdApiResourceImpl - config file absolute path
= /tmp/lvg.properties
27 Jun 2016 17:35:01 INFO LvgCmdApiResourceImpl - cwd =
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
27 Jun 2016 17:35:01 INFO LvgCmdApiResourceImpl - cd
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data>
(No such file or directory)
** Error: problem of opening/reading stop words file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data>
(No such file or directory)
** Error: problem of opening/reading non-Info words file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data>
(No such file or directory)
** Error: problem of opening/reading conjunction words file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data>
(No such file or directory)
** Error: problem of opening/reading ligature file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data>
(No such file or directory)
** Error: problem of opening/reading Unicode symbol file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data>
(No such file or directory)
** Error: problem of opening/reading Unicode file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data>
(No such file or directory)
** Error: problem of opening/reading nonStripMap file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data>
(No such file or directory)
** Error: problem of opening/reading stop words file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data>
(No such file or directory)
** Error: problem of opening/reading non-Info words file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data>
(No such file or directory)
** Error: problem of opening/reading conjunction words file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data>
(No such file or directory)
** Error: problem of opening/reading ligature file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data>
(No such file or directory)
** Error: problem of opening/reading Unicode symbol file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data>
(No such file or directory)
** Error: problem of opening/reading Unicode file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data>
(No such file or directory)
** Error: problem of opening/reading nonStripMap file:
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data>
(No such file or directory)
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException:
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul>
(No such file or directory)
**Error: problem of opening/reading file
'<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
27 Jun 2016 17:35:01 INFO LvgCmdApiResourceImpl - cd
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
27 Jun 2016 17:35:01 INFO TokenizerAnnotatorPTB - Initializing
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
27 Jun 2016 17:35:01 INFO POSTagger - POS tagger model file:
org/apache/ctakes/postagger/models/mayo-pos.zip
27 Jun 2016 17:35:01 INFO SentenceDetector - Starting processing.
27 Jun 2016 17:35:01 INFO TokenizerAnnotatorPTB - process(JCas) in
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
27 Jun 2016 17:35:01 INFO LvgAnnotator - process(JCas)
27 Jun 2016 17:35:02 INFO ContextDependentTokenizerAnnotator - process(JCas)
27 Jun 2016 17:35:02 INFO POSTagger - process(JCas)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
27 Jun 2016 17:35:02 INFO EventTimeRelationAnnotatorTest - Relation:
RelationArgument
id: 0
argument: TimeMention
sofa: _InitialView
begin: 58
end: 66
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 0.0
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
date: <null>
time: <null>
timeClass: <null>
role: "Arg1"
participatesIn: <null>
RelationArgument
id: 0
argument: EventMention
sofa: _InitialView
begin: 67
end: 76
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 1.3807402
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
event: Event
id: 0
ontologyConcept: <null>
mentions: <null>
discoveryTechnique: 0
confidence: 0.0
conditional: false
generic: false
subject: <null>
polarity: 0
uncertainty: 0
historyOf: 0
properties: EventProperties
contextualModality: <null>
contextualAspect: <null>
permanence: <null>
category: <null>
aspect: <null>
docTimeRel: <null>
degree: <null>
polarity: 0
role: "Arg2"
participatesIn: <null>
Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 36.971 sec
Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest
27 Jun 2016 17:35:05 INFO ClearNLPDependencyParserAE - using Morphy analysis?
true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
...........Killed
Results :
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
