See
<https://builds.apache.org/job/ctakes-trunk-package/org.apache.ctakes$ctakes-ytex/535/display/redirect?page=changes>
Changes:
[seanfinan] updated hsqldb version
------------------------------------------
[...truncated 27.14 KB...]
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/uima/drop_view.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex72868930.sql
29 Mar 2017 11:59:31 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex72868930.sql
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:31 INFO ENGINE - Database closed
[sql] 9 of 9 SQL statements executed successfully
[delete] Deleting: /tmp/ytex72868930.sql
[delete] Deleting: /tmp/ytex901329081use.sql
jdbc.sqlcmd:
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/uima/drop_document.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex1086544102.sql
29 Mar 2017 11:59:31 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex1086544102.sql
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:31 INFO ENGINE - Database closed
[sql] 29 of 29 SQL statements executed successfully
[delete] Deleting: /tmp/ytex1086544102.sql
[delete] Deleting: /tmp/ytex1306331866use.sql
jdbc.sqlcmd:
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/uima/drop_reference.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex1343645068.sql
29 Mar 2017 11:59:31 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex1343645068.sql
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:31 INFO ENGINE - Database closed
[sql] 7 of 7 SQL statements executed successfully
[delete] Deleting: /tmp/ytex1343645068.sql
[delete] Deleting: /tmp/ytex1773510923use.sql
uima.create:
jdbc.sqlcmd:
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/uima/create_reference.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex1782209502.sql
29 Mar 2017 11:59:31 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex1782209502.sql
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:31 INFO ENGINE - Database closed
[sql] 10 of 10 SQL statements executed successfully
[delete] Deleting: /tmp/ytex1782209502.sql
[delete] Deleting: /tmp/ytex322076909use.sql
jdbc.sqlcmd:
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/uima/create_document.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex1120353666.sql
29 Mar 2017 11:59:31 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex1120353666.sql
29 Mar 2017 11:59:31 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:32 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:32 INFO ENGINE - Database closed
[sql] 36 of 36 SQL statements executed successfully
[delete] Deleting: /tmp/ytex1120353666.sql
[delete] Deleting: /tmp/ytex992803077use.sql
jdbc.sqlcmd:
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/uima/create_view.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex1287835386.sql
29 Mar 2017 11:59:32 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:32 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:32 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex1287835386.sql
29 Mar 2017 11:59:32 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:32 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:32 INFO ENGINE - Database closed
[sql] 5 of 5 SQL statements executed successfully
[delete] Deleting: /tmp/ytex1287835386.sql
[delete] Deleting: /tmp/ytex538187499use.sql
uima.create.trigger:
init:
init.conn:
[copy] Copying 1 file to /tmp
uima.ref.load:
jdl:
[echo] jdl.format ref_uima_type.xml
[echo] jdl.data ref_uima_type.txt
[echo] umls.prefix
[copy] Copying 1 file to /tmp
[java] 2017-03-29 11:59:36,213 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - delimiter 9 encapsulator 65534
[java] 2017-03-29 11:59:36,220 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - insert into PUBLIC.ref_uima_type
(uima_type_id,uima_type_name,table_name) values (?,?,?)
[java] 2017-03-29 11:59:36,668 INFO hsqldb.db..ENGINE - open start -
state not modified
[java] 2017-03-29 11:59:36,716 INFO hsqldb.db..ENGINE - dataFileCache
open start
[java] 2017-03-29 11:59:36,728 INFO hsqldb.db..ENGINE - dataFileCache
open end
[java] 2017-03-29 11:59:36,781 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 38 rows total
[java] 2017-03-29 11:59:36,795 INFO hsqldb.db..ENGINE - dataFileCache
commit start
[java] 2017-03-29 11:59:36,809 INFO hsqldb.db..ENGINE - dataFileCache
commit end
[java] 2017-03-29 11:59:36,824 INFO hsqldb.db..ENGINE - Database closed
init:
init.conn:
[copy] Copying 1 file to /tmp
uima.examples.load:
jdl:
[echo] jdl.format examples/fracture_demo.xml
[echo] jdl.data examples/fracture_demo.txt
[echo] umls.prefix
[copy] Copying 1 file to /tmp
[java] 2017-03-29 11:59:41,044 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - delimiter 9 encapsulator 65534
[java] 2017-03-29 11:59:41,051 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - insert into PUBLIC.fracture_demo
(site_id,note_text,fracture,note_set) values (?,?,?,?)
[java] 2017-03-29 11:59:41,546 INFO hsqldb.db..ENGINE - open start -
state not modified
[java] 2017-03-29 11:59:41,590 INFO hsqldb.db..ENGINE - dataFileCache
open start
[java] 2017-03-29 11:59:41,604 INFO hsqldb.db..ENGINE - dataFileCache
open end
[java] 2017-03-29 11:59:41,649 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,649 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,650 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,656 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,657 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,658 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,659 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,660 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,661 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,661 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,662 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,663 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,664 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,665 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,665 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 2 rows
[java] 2017-03-29 11:59:41,666 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 31 rows total
[java] 2017-03-29 11:59:41,680 INFO hsqldb.db..ENGINE - dataFileCache
commit start
[java] 2017-03-29 11:59:41,697 INFO hsqldb.db..ENGINE - dataFileCache
commit end
[java] 2017-03-29 11:59:41,713 INFO hsqldb.db..ENGINE - Database closed
jdbc.sqlcmd:
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/uima/fracture_demo.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex1440355415.sql
29 Mar 2017 11:59:42 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:42 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:42 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex1440355415.sql
29 Mar 2017 11:59:42 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:42 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:42 INFO ENGINE - Database closed
[sql] 2 of 2 SQL statements executed successfully
[delete] Deleting: /tmp/ytex1440355415.sql
[delete] Deleting: /tmp/ytex1752072325use.sql
init:
init.conn:
[copy] Copying 1 file to /tmp
uima.stopword.load:
jdl:
[echo] jdl.format stopword.xml
[echo] jdl.data stopword.txt
[echo] umls.prefix
[copy] Copying 1 file to /tmp
[java] 2017-03-29 11:59:46,396 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - delimiter 44 encapsulator 65534
[java] 2017-03-29 11:59:46,403 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - insert into PUBLIC.ref_stopword
(stopword) values (?)
[java] 2017-03-29 11:59:46,863 INFO hsqldb.db..ENGINE - open start -
state not modified
[java] 2017-03-29 11:59:46,908 INFO hsqldb.db..ENGINE - dataFileCache
open start
[java] 2017-03-29 11:59:46,922 INFO hsqldb.db..ENGINE - dataFileCache
open end
[java] 2017-03-29 11:59:46,999 INFO
org.apache.ctakes.jdl.data.loader.CsvLoader - inserted 360 rows total
[java] 2017-03-29 11:59:47,011 INFO hsqldb.db..ENGINE - dataFileCache
commit start
[java] 2017-03-29 11:59:47,039 INFO hsqldb.db..ENGINE - dataFileCache
commit end
[java] 2017-03-29 11:59:47,049 INFO hsqldb.db..ENGINE - Database closed
uima.all:
kernel.drop:
jdbc.sqlcmd:
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/kernel/drop_tables.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex739246523.sql
29 Mar 2017 11:59:47 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:47 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:47 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex739246523.sql
29 Mar 2017 11:59:47 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:47 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:47 INFO ENGINE - Database closed
[sql] 22 of 22 SQL statements executed successfully
[delete] Deleting: /tmp/ytex739246523.sql
[delete] Deleting: /tmp/ytex350208584use.sql
kernel.create:
jdbc.sqlcmd:
[echo] db.schemaPUBLIC
[echo] umls.schema ${db.schema}
[echo] umls.catalog
[echo] execute ./hsql/kernel/create_tables.sql
[copy] Copying 1 file to /tmp
[echo] executing /tmp/ytex1179251641.sql
29 Mar 2017 11:59:47 INFO ENGINE - open start - state not modified
29 Mar 2017 11:59:47 INFO ENGINE - dataFileCache open start
29 Mar 2017 11:59:47 INFO ENGINE - dataFileCache open end
[sql] Executing resource: /tmp/ytex1179251641.sql
[sql] Failed to execute: CREATE CACHED TABLE classifier_eval_svm (
classifier_eval_id int not null , cost double DEFAULT '0', weight varchar(50),
degree int DEFAULT '0', gamma double DEFAULT '0', kernel int NULL,
supportVectors int null, vcdim double null )
29 Mar 2017 11:59:47 INFO ENGINE - dataFileCache commit start
29 Mar 2017 11:59:47 INFO ENGINE - dataFileCache commit end
29 Mar 2017 11:59:47 INFO ENGINE - Database closed
