James Joseph Masanz created CTAKES-435:
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Summary: AE descriptors for processing CDA input is using
deprecated assertion annotators
Key: CTAKES-435
URL: https://issues.apache.org/jira/browse/CTAKES-435
Project: cTAKES
Issue Type: Bug
Components: ctakes-assertion, ctakes-clinical-pipeline
Affects Versions: 4.0.0
Reporter: James Joseph Masanz
Assignee: James Joseph Masanz
Priority: Minor
Fix For: future enhancement
Found while testing rc3 for 4.0.0. This looks like something that can be fixed
in the next point release. Users can get an updated .xml file if they need a
fix for this, which will use the later version of the assertion annotators
Symptoms:
Using AggregateCdaUMLSProcessor.xml or AggregateCdaProcessor.xml
Might notice the following warnings while loading the AE:
WARN BatchRunner - This class cannot be used until CTAKES-76 is implemented.
WARN JarafeMEDecoder - This class cannot be used until CTAKES-76 is
implemented.
The following occur when running the AE against a document:
WARN SingleDocumentProcessor - This class cannot be used until CTAKES-76 is
implemented.
WARN SingleDocumentProcessor - This class cannot be used until CTAKES-76 is
implemented.
WARN SingleDocumentProcessor - This class cannot be used until CTAKES-76 is
implemented.
And when run the AE, a stack trace that includes:
Caused by: java.lang.NullPointerException
at
org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine.process(AssertionAnalysisEngine.java:213)
at
org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:396)
... 51 more
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