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https://issues.apache.org/jira/browse/CTAKES-435?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
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James Joseph Masanz resolved CTAKES-435.
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Resolution: Fixed
fix does not require a recompile of any java code. not sure if anyone uses
these AE descriptors for processing CDA documents.
> AE descriptors for processing CDA input is using deprecated assertion
> annotators
> --------------------------------------------------------------------------------
>
> Key: CTAKES-435
> URL: https://issues.apache.org/jira/browse/CTAKES-435
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-assertion, ctakes-clinical-pipeline
> Affects Versions: 4.0.0
> Reporter: James Joseph Masanz
> Assignee: James Joseph Masanz
> Priority: Minor
> Fix For: future enhancement
>
>
> Found while testing rc3 for 4.0.0. This looks like something that can be
> fixed in the next point release. Users can get an updated .xml file if they
> need a fix for this, which will use the later version of the assertion
> annotators
> Symptoms:
> Using AggregateCdaUMLSProcessor.xml or AggregateCdaProcessor.xml
> Might notice the following warnings while loading the AE:
> WARN BatchRunner - This class cannot be used until CTAKES-76 is implemented.
> WARN JarafeMEDecoder - This class cannot be used until CTAKES-76 is
> implemented.
> The following occur when running the AE against a document:
> WARN SingleDocumentProcessor - This class cannot be used until CTAKES-76 is
> implemented.
> WARN SingleDocumentProcessor - This class cannot be used until CTAKES-76 is
> implemented.
> WARN SingleDocumentProcessor - This class cannot be used until CTAKES-76 is
> implemented.
> And when run the AE, a stack trace that includes:
> Caused by: java.lang.NullPointerException
> at
> org.apache.ctakes.assertion.medfacts.AssertionAnalysisEngine.process(AssertionAnalysisEngine.java:213)
> at
> org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
> at
> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:396)
> ... 51 more
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