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https://issues.apache.org/jira/browse/CTAKES-450?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16184166#comment-16184166
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Alex Zbarcea commented on CTAKES-450:
-------------------------------------
Thank you for your feedback. I look forward to see the patch applied.
> CDASegmentAnnotator misses all headings after empty segment
> -----------------------------------------------------------
>
> Key: CTAKES-450
> URL: https://issues.apache.org/jira/browse/CTAKES-450
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-core
> Reporter: Kean Kaufmann
> Attachments: CDASegmentAnnotator.diff,
> CDASegmentAnnotator-empty-segment.CTAKES-450.svn.patch
>
>
> If the CDASegmentAnnotator encounters an empty segment, it throws away
> everything after that in the document. You can see this in the test document
> provided for TestCDASegmentAnnotator. The heading "CURRENT HEALTH STATUS" is
> followed immediately by the heading "Medications"; the test case misses the
> "Medications" heading, and "FAMILY HISTORY" after that. The sorted_segments
> loop is only incrementing the index variable for non-empty segments.
> Patch attached.
> TestCDASegmentAnnotator output before fix (with getPreferredText()):
> Segment:2.16.840.1.113883.10.20.22.1.1 Begin:92 End:159: Header
> Segment:1.3.6.1.4.1.19376.1.5.3.1.1.13.2.1 Begin:176 End:1612: CHIEF COMPLAINT
> Segment:2.16.840.1.113883.10.20.22.2.20 Begin:1634 End:1696: HISTORY OF PAST
> ILLNESS
> Segment:2.16.840.1.113883.10.20.22.2.2.1 Begin:1711 End:2271: History of
> immunizations
> After fix:
> Segment:2.16.840.1.113883.10.20.22.1.1 Begin:92 End:159: Header
> Segment:1.3.6.1.4.1.19376.1.5.3.1.1.13.2.1 Begin:176 End:1612: CHIEF COMPLAINT
> Segment:2.16.840.1.113883.10.20.22.2.20 Begin:1634 End:1696: HISTORY OF PAST
> ILLNESS
> Segment:2.16.840.1.113883.10.20.22.2.2.1 Begin:1711 End:2271: History of
> immunizations
> Segment:2.16.840.1.113883.10.20.22.2.1.1 Begin:2307 End:3506: HISTORY OF
> MEDICATION USE
> Segment:2.16.840.1.113883.10.20.22.2.15 Begin:3522 End:5608: Family History
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