See
<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/29/display/redirect>
------------------------------------------
[...truncated 205.12 KB...]
2017-11-16 21:41:26,964 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,965 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:26,965 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,965 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:26,965 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,965 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:26,965 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,965 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,967 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:26,967 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoLinks
2017-11-16 21:41:26,967 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoLinks
2017-11-16 21:41:26,967 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnotationsHib
2017-11-16 21:41:26,969 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveDocument
2017-11-16 21:41:26,969 INFO org.apache.ctakes.ytex.uima.DBCollectionReader -
loading document with id = {INSTANCE_ID=26}
2017-11-16 21:41:26,970 DEBUG
org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator - segmentsAdded: 0
2017-11-16 21:41:26,970 INFO
org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Starting processing.
2017-11-16 21:41:26,971 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
- process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-16 21:41:26,972 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveDocument
2017-11-16 21:41:26,974 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnotationsHib
2017-11-16 21:41:26,974 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoBaseHib
2017-11-16 21:41:26,979 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoBaseHib
2017-11-16 21:41:26,979 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
insertAnnotationContainmentLinks
2017-11-16 21:41:26,981 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
insertAnnotationContainmentLinks
2017-11-16 21:41:26,981 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,981 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,982 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:26,982 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,982 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:26,982 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,982 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:26,982 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,982 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:26,985 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:26,985 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoLinks
2017-11-16 21:41:26,985 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoLinks
2017-11-16 21:41:26,985 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnotationsHib
2017-11-16 21:41:26,987 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveDocument
2017-11-16 21:41:26,987 INFO org.apache.ctakes.ytex.uima.DBCollectionReader -
loading document with id = {INSTANCE_ID=27}
2017-11-16 21:41:26,988 DEBUG
org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator - segmentsAdded: 0
2017-11-16 21:41:26,988 INFO
org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Starting processing.
2017-11-16 21:41:26,989 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
- process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-16 21:41:26,991 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveDocument
2017-11-16 21:41:26,994 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnotationsHib
2017-11-16 21:41:26,994 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoBaseHib
2017-11-16 21:41:26,998 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoBaseHib
2017-11-16 21:41:26,998 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
insertAnnotationContainmentLinks
2017-11-16 21:41:27,001 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
insertAnnotationContainmentLinks
2017-11-16 21:41:27,001 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,001 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,001 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,001 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,002 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,002 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,002 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,002 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,002 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,004 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,004 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoLinks
2017-11-16 21:41:27,004 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoLinks
2017-11-16 21:41:27,004 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnotationsHib
2017-11-16 21:41:27,005 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveDocument
2017-11-16 21:41:27,006 INFO org.apache.ctakes.ytex.uima.DBCollectionReader -
loading document with id = {INSTANCE_ID=28}
2017-11-16 21:41:27,007 DEBUG
org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator - segmentsAdded: 0
2017-11-16 21:41:27,007 INFO
org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Starting processing.
2017-11-16 21:41:27,007 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
- process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-16 21:41:27,009 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveDocument
2017-11-16 21:41:27,012 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnotationsHib
2017-11-16 21:41:27,012 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoBaseHib
2017-11-16 21:41:27,019 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoBaseHib
2017-11-16 21:41:27,019 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
insertAnnotationContainmentLinks
2017-11-16 21:41:27,024 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
insertAnnotationContainmentLinks
2017-11-16 21:41:27,024 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,024 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,025 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,025 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,025 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,025 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,025 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,025 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,025 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,027 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,027 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoLinks
2017-11-16 21:41:27,027 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoLinks
2017-11-16 21:41:27,027 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnotationsHib
2017-11-16 21:41:27,029 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveDocument
2017-11-16 21:41:27,029 INFO org.apache.ctakes.ytex.uima.DBCollectionReader -
loading document with id = {INSTANCE_ID=29}
2017-11-16 21:41:27,030 DEBUG
org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator - segmentsAdded: 0
2017-11-16 21:41:27,030 INFO
org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Starting processing.
2017-11-16 21:41:27,030 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
- process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-16 21:41:27,031 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveDocument
2017-11-16 21:41:27,033 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnotationsHib
2017-11-16 21:41:27,033 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoBaseHib
2017-11-16 21:41:27,035 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoBaseHib
2017-11-16 21:41:27,035 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
insertAnnotationContainmentLinks
2017-11-16 21:41:27,036 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
insertAnnotationContainmentLinks
2017-11-16 21:41:27,036 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,036 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,037 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,037 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,037 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,037 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,037 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,037 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,038 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoLinks
2017-11-16 21:41:27,038 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoLinks
2017-11-16 21:41:27,038 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnotationsHib
2017-11-16 21:41:27,038 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveDocument
2017-11-16 21:41:27,039 INFO org.apache.ctakes.ytex.uima.DBCollectionReader -
loading document with id = {INSTANCE_ID=30}
2017-11-16 21:41:27,039 DEBUG
org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator - segmentsAdded: 0
2017-11-16 21:41:27,040 INFO
org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Starting processing.
2017-11-16 21:41:27,040 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
- process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-16 21:41:27,043 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveDocument
2017-11-16 21:41:27,045 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnotationsHib
2017-11-16 21:41:27,045 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoBaseHib
2017-11-16 21:41:27,053 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoBaseHib
2017-11-16 21:41:27,053 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
insertAnnotationContainmentLinks
2017-11-16 21:41:27,058 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
insertAnnotationContainmentLinks
2017-11-16 21:41:27,058 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,058 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,058 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,059 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,059 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,059 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,060 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,060 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,060 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:27,061 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:27,062 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoLinks
2017-11-16 21:41:27,062 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoLinks
2017-11-16 21:41:27,062 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnotationsHib
2017-11-16 21:41:27,063 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveDocument
temp dir:
<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/./target/SparseDataExporterTest-1510868479414/sparsematrix>
temp dir:
<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/./target/SparseDataExporterTest-1510868479414/weka>
temp dir:
<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/./target/SparseDataExporterTest-1510868479414/libsvm>
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.855 sec
Running org.apache.ctakes.ytex.uima.annotators.DBConsumerTest
2017-11-16 21:41:27,795 INFO
org.apache.ctakes.ytex.uima.ApplicationContextHolder - loading ytex.properties
from:
<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/ytex.properties>
2017-11-16 21:41:27,797 INFO
org.apache.ctakes.ytex.uima.ApplicationContextHolder -
beanRefContext=classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml
2017-11-16 21:41:27,884 INFO
org.springframework.context.support.ClassPathXmlApplicationContext -
Refreshing
org.springframework.context.support.ClassPathXmlApplicationContext@643b1d11:
startup date [Thu Nov 16 21:41:27 UTC 2017]; root of context hierarchy
2017-11-16 21:41:27,947 INFO
org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML
bean definitions from URL
[jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-16 21:41:28,138 INFO
org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML
bean definitions from URL
[file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-16 21:41:28,147 INFO
org.springframework.beans.factory.support.DefaultListableBeanFactory -
Overriding bean definition for bean 'ytexApplicationContext': replacing
[Generic bean: class
[org.springframework.context.support.ClassPathXmlApplicationContext]; scope=;
abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0;
autowireCandidate=true; primary=false; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in
URL
[jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]]
with [Generic bean: class
[org.springframework.context.support.ClassPathXmlApplicationContext]; scope=;
abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0;
autowireCandidate=true; primary=false; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in
URL
[file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]]
2017-11-16 21:41:28,166 INFO
org.springframework.beans.factory.support.DefaultListableBeanFactory -
Pre-instantiating singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@12d3a4e9:
defining beans [ytexApplicationContext]; root of factory hierarchy
2017-11-16 21:41:28,230 INFO
org.springframework.context.support.ClassPathXmlApplicationContext -
Refreshing
org.springframework.context.support.ClassPathXmlApplicationContext@3eb7fc54:
startup date [Thu Nov 16 21:41:28 UTC 2017]; root of context hierarchy
2017-11-16 21:41:28,232 INFO
org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/beans-datasource.xml]
2017-11-16 21:41:28,442 INFO
org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/beans-kernel.xml]
2017-11-16 21:41:28,526 INFO
org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/beans-kernel-sim.xml]
2017-11-16 21:41:28,550 INFO
org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/uima/beans-uima.hbm.xml]
2017-11-16 21:41:28,570 INFO
org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/uima/beans-uima-dao.xml]
2017-11-16 21:41:28,598 INFO
org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML
bean definitions from class path resource
[org/apache/ctakes/ytex/uima/beans-uima-mapper.xml]
2017-11-16 21:41:28,618 INFO
org.springframework.beans.factory.support.DefaultListableBeanFactory -
Overriding bean definition for bean 'mapperOperation': replacing [Root bean:
class [org.springframework.aop.aspectj.AspectJExpressionPointcut];
scope=prototype; abstract=false; lazyInit=false; autowireMode=0;
dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null] with [Root
bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut];
scope=prototype; abstract=false; lazyInit=false; autowireMode=0;
dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null;
factoryMethodName=null; initMethodName=null; destroyMethodName=null]
2017-11-16 21:41:28,709 INFO
org.springframework.beans.factory.config.PropertyPlaceholderConfigurer -
Loading properties file from class path resource
[org/apache/ctakes/ytex/ytex-default.properties]
2017-11-16 21:41:28,710 INFO
org.springframework.beans.factory.config.PropertyPlaceholderConfigurer -
Loading properties file from class path resource
[org/apache/ctakes/ytex/ytex.properties]
2017-11-16 21:41:28,710 INFO
org.springframework.beans.factory.config.PropertyPlaceholderConfigurer -
Loading properties file from class path resource
[org/apache/ctakes/ytex/ytex-umls.properties]
2017-11-16 21:41:28,752 INFO
org.springframework.beans.factory.support.DefaultListableBeanFactory -
Pre-instantiating singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@623a8092:
defining beans
[org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService,conceptSimilarityService,abstractConceptKernel,abstractLinKernel,abstractSemanticSimKernel,mainSuiSemanticTypeKernel,tuiSemanticTypeKernel,wordSenseDisambiguator,sessionFactory,ytexDaoOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#8,documentDao,namedEntityRegexDao,segmentRegexDao,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#9,ISO8601Converter,documentMapperService];
root of factory hierarchy
2017-11-16 21:41:28,795 INFO
org.springframework.beans.factory.config.PropertiesFactoryBean - Loading
properties file from class path resource
[org/apache/ctakes/ytex/ytex.properties]
2017-11-16 21:41:29,468 INFO org.hibernate.annotations.common.Version -
HCANN000001: Hibernate Commons Annotations {4.0.2.Final}
2017-11-16 21:41:29,476 INFO org.hibernate.Version - HHH000412: Hibernate
Core {4.2.6.Final}
2017-11-16 21:41:29,479 INFO org.hibernate.cfg.Environment - HHH000206:
hibernate.properties not found
2017-11-16 21:41:29,481 INFO org.hibernate.cfg.Environment - HHH000021:
Bytecode provider name : javassist
2017-11-16 21:41:30,200 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache open start
2017-11-16 21:41:30,209 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache open end
2017-11-16 21:41:30,580 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
checkpointClose start
2017-11-16 21:41:30,600 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache commit start
2017-11-16 21:41:30,667 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache commit end
2017-11-16 21:41:30,671 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
checkpointClose end
2017-11-16 21:41:30,697 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache commit start
2017-11-16 21:41:30,702 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache commit end
2017-11-16 21:41:30,706 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE - Database
closed
2017-11-16 21:41:30,857 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache open start
2017-11-16 21:41:30,857 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache open end
2017-11-16 21:41:30,934 INFO org.hibernate.dialect.Dialect - HHH000400: Using
dialect: org.hibernate.dialect.HSQLDialect
2017-11-16 21:41:31,052 WARN org.hibernate.mapping.RootClass - HHH000038:
Composite-id class does not override equals():
org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-16 21:41:31,052 WARN org.hibernate.mapping.RootClass - HHH000039:
Composite-id class does not override hashCode():
org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-16 21:41:31,057 INFO
org.hibernate.engine.transaction.internal.TransactionFactoryInitiator -
HHH000399: Using default transaction strategy (direct JDBC transactions)
2017-11-16 21:41:31,062 INFO
org.hibernate.hql.internal.ast.ASTQueryTranslatorFactory - HHH000397: Using
ASTQueryTranslatorFactory
2017-11-16 21:41:31,213 INFO org.hibernate.cache.spi.UpdateTimestampsCache -
HHH000250: Starting update timestamps cache at region:
org.hibernate.cache.spi.UpdateTimestampsCache
2017-11-16 21:41:31,218 INFO org.hibernate.cache.internal.StandardQueryCache
- HHH000248: Starting query cache at region:
org.hibernate.cache.internal.StandardQueryCache
2017-11-16 21:41:31,239 INFO org.hibernate.id.enhanced.TableGenerator -
HHH000398: Explicit segment value for id generator
[PUBLIC.hibernate_sequences.sequence_name] suggested; using default [default]
2017-11-16 21:41:31,441 WARN
org.hibernate.cache.ehcache.AbstractEhcacheRegionFactory - HHH020003: Could
not find a specific ehcache configuration for cache named
[org.apache.ctakes.ytex.uima.model.UimaType]; using defaults.
2017-11-16 21:41:31,443 WARN
org.hibernate.cache.ehcache.internal.strategy.EhcacheAccessStrategyFactoryImpl
- HHH020007: read-only cache configured for mutable entity
[org.apache.ctakes.ytex.uima.model.UimaType]
2017-11-16 21:41:31,962 INFO
org.springframework.orm.hibernate4.HibernateTransactionManager - Using
DataSource [org.apache.commons.dbcp.BasicDataSource@2d5f7182] of Hibernate
SessionFactory for HibernateTransactionManager
2017-11-16 21:41:32,350 INFO
org.springframework.cache.ehcache.EhCacheManagerFactoryBean - Initializing
EHCache CacheManager
2017-11-16 21:41:32,364 WARN net.sf.ehcache.CacheManager - Creating a new
instance of CacheManager using the diskStorePath "/tmp" which is already used
by an existing CacheManager.
The source of the configuration was
net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@57a48985.
The diskStore path for this CacheManager will be set to
/tmp/ehcache_auto_created_1510868492364.
To avoid this warning consider using the CacheManager factory methods to create
a singleton CacheManager or specifying a separate ehcache configuration
(ehcache.xml) for each CacheManager instance.
2017-11-16 21:41:32,700 INFO
org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - begin
initialization for concept graph: sct-rxnorm
2017-11-16 21:41:32,764 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
- could not load conceptGraph from classpath, attempt to load from:
<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz>
2017-11-16 21:41:32,764 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
-
<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz>
not found, cannot load concept graph
2017-11-16 21:41:32,764 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl
- could not load conceptGraph: sct-rxnorm
2017-11-16 21:41:32,854 WARN
org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - concept
graph null, name: sct-rxnorm
2017-11-16 21:41:32,854 INFO
org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - end
initialization for concept graph: sct-rxnorm
2017-11-16 21:41:33,117 INFO org.hibernate.dialect.Dialect - HHH000400: Using
dialect: org.hibernate.dialect.HSQLDialect
2017-11-16 21:41:33,199 INFO
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - document table
name = PUBLIC.document
2017-11-16 21:41:33,201 DEBUG
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - docTableCols: {}
2017-11-16 21:41:33,741 INFO
org.apache.ctakes.ytex.uima.annotators.SentenceDetector - [SegmentsToSkip,
SentenceModelFile]
2017-11-16 21:41:33,806 INFO
org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Sentence detector
model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
2017-11-16 21:41:33,942 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
- Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-16 21:41:34,254 DEBUG
org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator - segmentsAdded: 0
2017-11-16 21:41:34,256 INFO
org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Starting processing.
2017-11-16 21:41:34,260 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
- process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-16 21:41:34,273 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveDocument
2017-11-16 21:41:34,371 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnotationsHib
2017-11-16 21:41:34,371 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoBaseHib
2017-11-16 21:41:34,400 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoBaseHib
2017-11-16 21:41:34,400 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
insertAnnotationContainmentLinks
2017-11-16 21:41:34,414 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
insertAnnotationContainmentLinks
2017-11-16 21:41:34,429 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:34,472 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:34,475 INFO
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - sql insert for
type org.apache.ctakes.typesystem.type.textspan.Segment: insert into
anno_segment(anno_base_id, "ID") values (?, ?)
2017-11-16 21:41:34,476 DEBUG
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl -
initMapInfo(segment): AnnoMappingInfo [mapField={ID=ColumnMappingInfo
[columnName=ID]}, tableName=anno_segment]
2017-11-16 21:41:34,483 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:34,484 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:34,486 INFO
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - sql insert for
type org.apache.ctakes.typesystem.type.textspan.Sentence: insert into
anno_sentence(anno_base_id, "SEGMENTID", "SENTENCENUMBER") values (?, ?, ?)
2017-11-16 21:41:34,487 DEBUG
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl -
initMapInfo(sentence): AnnoMappingInfo [mapField={SEGMENTID=ColumnMappingInfo
[columnName=SEGMENTID], SENTENCENUMBER=ColumnMappingInfo
[columnName=SENTENCENUMBER]}, tableName=anno_sentence]
2017-11-16 21:41:34,488 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:34,488 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:34,489 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoPrimitive
2017-11-16 21:41:34,492 INFO
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - sql insert for
type org.apache.ctakes.typesystem.type.syntax.WordToken: insert into
anno_token(anno_base_id, coveredText, "CANONICALFORM", "CAPITALIZATION",
"NORMALIZEDFORM", "NUMPOSITION", "PARTOFSPEECH", "SUGGESTION", "TOKENNUMBER")
values (?, ?, ?, ?, ?, ?, ?, ?, ?)
2017-11-16 21:41:34,492 DEBUG
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl -
initMapInfo(wordtoken): AnnoMappingInfo
[mapField={CANONICALFORM=ColumnMappingInfo [columnName=CANONICALFORM],
CAPITALIZATION=ColumnMappingInfo [columnName=CAPITALIZATION],
NORMALIZEDFORM=ColumnMappingInfo [columnName=NORMALIZEDFORM],
NUMPOSITION=ColumnMappingInfo [columnName=NUMPOSITION],
PARTOFSPEECH=ColumnMappingInfo [columnName=PARTOFSPEECH],
SUGGESTION=ColumnMappingInfo [columnName=SUGGESTION],
TOKENNUMBER=ColumnMappingInfo [columnName=TOKENNUMBER]}, tableName=anno_token]
2017-11-16 21:41:34,499 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoPrimitive
2017-11-16 21:41:34,509 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin
saveAnnoLinks
2017-11-16 21:41:34,509 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnoLinks
2017-11-16 21:41:34,509 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end
saveAnnotationsHib
2017-11-16 21:41:34,517 TRACE
org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveDocument
2017-11-16 21:41:34,528 INFO
org.springframework.context.support.ClassPathXmlApplicationContext - Closing
ApplicationContext 'ytexApplicationContext': startup date [Thu Nov 16 21:41:28
UTC 2017]; root of context hierarchy
2017-11-16 21:41:34,529 INFO
org.springframework.beans.factory.support.DefaultListableBeanFactory -
Destroying singletons in
org.springframework.beans.factory.support.DefaultListableBeanFactory@623a8092:
defining beans
[org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService,conceptSimilarityService,abstractConceptKernel,abstractLinKernel,abstractSemanticSimKernel,mainSuiSemanticTypeKernel,tuiSemanticTypeKernel,wordSenseDisambiguator,sessionFactory,ytexDaoOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#8,documentDao,namedEntityRegexDao,segmentRegexDao,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#9,ISO8601Converter,documentMapperService];
root of factory hierarchy
2017-11-16 21:41:34,530 INFO
org.springframework.cache.ehcache.EhCacheManagerFactoryBean - Shutting down
EHCache CacheManager
2017-11-16 21:41:34,546 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache commit start
2017-11-16 21:41:34,609 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE -
dataFileCache commit end
2017-11-16 21:41:34,612 INFO hsqldb.db.HSQLDB5FC6C680C5.ENGINE - Database
closed
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.076 sec
Running org.apache.ctakes.ytex.tools.SetupAuiFirstWordTest
2017-11-16 21:41:35,311 WARN org.apache.ctakes.ytex.tools.SetupAuiFirstWord -
classpath:ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml not available,
attempting to load from file system
2017-11-16 21:41:35,471 INFO org.apache.ctakes.ytex.tools.SetupAuiFirstWord -
loading lvg.properties
from:file:/home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
** Configuration Error:
<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/file>:/home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/file:/home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
(No such file or directory)
** Error: problem of opening/reading config file:
'<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/file>:/home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg//file:/home/jenkins/jenkins-slave/maven-repositories/1/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'.
Use -x option to specify the config file path.
UmlsAuiFirstWord [aui=1tok, fword=heart]
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.368 sec
Results :
Failed tests:
testParseDate(org.apache.ctakes.ytex.uima.annotators.DateAnnotatorTest)
Tests run: 13, Failures: 1, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
