See 
<https://builds.apache.org/job/ctakes-trunk-Java-1.9/32/display/redirect?page=changes>

Changes:

[tmill] Fix to patient-aware coreference with new API. Compiles and evaluates 
correctly.

------------------------------------------
[...truncated 324.93 KB...]
A         ctakes-lvg/src/main/java/org
A         ctakes-lvg/src/main/java/org/apache
A         ctakes-lvg/src/main/java/org/apache/ctakes
A         ctakes-lvg/src/main/java/org/apache/ctakes/lvg
A         ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae
A         
ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgBaseTokenAnnotator.java
A         ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgSingleton.java
A         ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/LvgAnnotator.java
A         ctakes-lvg/src/main/java/org/apache/ctakes/lvg/ae/ThreadSafeLvg.java
A         ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource
A         
ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResourceImpl.java
A         
ctakes-lvg/src/main/java/org/apache/ctakes/lvg/resource/LvgCmdApiResource.java
A         ctakes-lvg/pom.xml
A         ctakes-lvg/resources
A         ctakes-lvg/resources/launch
AU        ctakes-lvg/resources/launch/UIMA_CVD--LVG.launch
A         ctakes-lvg/README
A         ctakes-lvg/desc
A         ctakes-lvg/desc/analysis_engine
A         ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml
A         ctakes-lvg/desc/analysis_engine/AggregateAE.xml
A         ctakes-context-tokenizer
A         ctakes-context-tokenizer/data
A         ctakes-context-tokenizer/data/test
A         ctakes-context-tokenizer/data/test/output
A         ctakes-context-tokenizer/pom.xml
A         ctakes-context-tokenizer/resources
A         ctakes-context-tokenizer/resources/launch
A         ctakes-context-tokenizer/README
A         ctakes-context-tokenizer/desc
A         ctakes-context-tokenizer/desc/analysis_engine
A         ctakes-context-tokenizer/desc/analysis_engine/TestTAE.xml
A         ctakes-context-tokenizer/desc/analysis_engine/AggregateAE.xml
A         
ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml
A         ctakes-context-tokenizer/LICENSE
A         ctakes-context-tokenizer/src
A         ctakes-context-tokenizer/src/test
A         ctakes-context-tokenizer/src/test/java
A         ctakes-context-tokenizer/src/test/java/org
A         ctakes-context-tokenizer/src/test/java/org/apache
A         ctakes-context-tokenizer/src/test/java/org/apache/ctakes
A         
ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer
A         
ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer/ae
AU        
ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer/ae/TestContextDependentTokenizerAnnotator.java
A         ctakes-context-tokenizer/src/main
A         ctakes-context-tokenizer/src/main/java
A         ctakes-context-tokenizer/src/main/java/org
A         ctakes-context-tokenizer/src/main/java/org/apache
A         ctakes-context-tokenizer/src/main/java/org/apache/ctakes
A         
ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer
A         
ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae
A         
ctakes-context-tokenizer/src/main/java/org/apache/ctakes/contexttokenizer/ae/ContextDependentTokenizerAnnotator.java
A         ctakes-context-tokenizer/src/main/java/org/apache/ctakes/context
A         ctakes-ne-contexts-res
A         ctakes-ne-contexts-res/pom.xml
A         ctakes-ne-contexts-res/LICENSE
A         ctakes-ne-contexts-res/src
A         ctakes-ne-contexts-res/src/test
A         ctakes-ne-contexts-res/src/main
A         ctakes-ne-contexts-res/src/main/resources
A         ctakes-ne-contexts-res/src/main/resources/org
A         ctakes-ne-contexts-res/src/main/resources/org/apache
A         ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes
A         ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts
A         
ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/pipeline
A         
ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/pipeline/NeContextsSubPipe.piper
A         
ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc
A         
ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc/NegationAnnotator.xml
A         ctakes-chunker
A         ctakes-chunker/data
A         ctakes-chunker/data/chunk
A         ctakes-chunker/data/chunk/combinations
A         ctakes-chunker/data/chunk/ptb
A         ctakes-chunker/data/chunk/ptb/README
A         ctakes-chunker/data/chunk/genia
A         ctakes-chunker/data/chunk/genia/README
A         ctakes-chunker/data/chunk/genia/genia.opennlp.chunks
A         ctakes-chunker/data/treebank
A         ctakes-chunker/data/treebank/genia
A         ctakes-chunker/data/treebank/genia/names-00.txt
A         ctakes-chunker/data/treebank/genia/00
A         ctakes-chunker/data/treebank/genia/names-01.txt
A         ctakes-chunker/data/treebank/genia/01
A         ctakes-chunker/data/treebank/genia/README
A         ctakes-chunker/pom.xml
A         ctakes-chunker/resources
A         ctakes-chunker/resources/launch
AU        ctakes-chunker/resources/launch/ChunkAdjusterTests.launch
AU        ctakes-chunker/resources/launch/chunker.launch
AU        ctakes-chunker/resources/launch/UIMA_CPE_GUI--chunker.launch
A         ctakes-chunker/README
A         ctakes-chunker/ExampleTrainChunker.bat
A         ctakes-chunker/desc
A         ctakes-chunker/desc/AggregateAE.xml
A         ctakes-chunker/desc/collection_processing_engine
A         ctakes-chunker/desc/Chunker.xml
A         ctakes-chunker/desc/test
A         ctakes-chunker/desc/test/ChunkerAggregate.xml
A         ctakes-chunker/desc/test/ChunkerCPE.xml
A         ctakes-chunker/desc/test/POSTagger.xml
A         ctakes-chunker/desc/test/PhraseTypeChunkerAggregate.xml
A         ctakes-chunker/desc/test/Chunker.xml
A         ctakes-chunker/desc/test/TokenizerAnnotator.xml
A         ctakes-chunker/desc/test/ChunkAdjusterAggregate.xml
A         ctakes-chunker/desc/test/ChunkerCpeUsingPosTagDictionary.xml
A         ctakes-chunker/desc/test/SimpleSegmentAnnotator.xml
A         ctakes-chunker/desc/test/AdjustNounPhraseToIncludeFollowingPPNP.xml
A         ctakes-chunker/desc/SimpleSegmentAnnotator.xml
A         ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingNP.xml
A         ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml
A         ctakes-chunker/desc/AdjustOPhraseToIncludeFollowingO.xml
A         ctakes-chunker/desc/ChunkerAggregate.xml
A         ctakes-chunker/desc/ChunkerCPE.xml
A         ctakes-chunker/desc/analysis_engine
A         ctakes-chunker/desc/ChunkAdjuster.xml
A         ctakes-chunker/desc/POSTagger.xml
A         ctakes-chunker/LICENSE
A         ctakes-chunker/scripts
A         ctakes-chunker/scripts/java
A         ctakes-chunker/scripts/java/data
A         ctakes-chunker/scripts/java/data/chunk
A         ctakes-chunker/scripts/java/data/chunk/genia
A         ctakes-chunker/scripts/java/data/chunk/genia/Genia2PTB.java
A         ctakes-chunker/scripts/java/data/chunk/Chunklink2OpenNLP.java
A         ctakes-chunker/scripts/perl
A         ctakes-chunker/scripts/perl/README
A         ctakes-chunker/scripts/groovy
A         ctakes-chunker/scripts/groovy/data
A         ctakes-chunker/scripts/groovy/data/chunk
A         ctakes-chunker/scripts/groovy/data/chunk/TagReport.groovy
A         ctakes-chunker/src
A         ctakes-chunker/src/test
A         ctakes-chunker/src/test/resources
A         ctakes-chunker/src/test/resources/data
A         ctakes-chunker/src/test/resources/data/README
A         ctakes-chunker/src/test/resources/data/output
A         
ctakes-chunker/src/test/resources/data/output/text1.txt.included.used.tag-dictionary.xml
A         ctakes-chunker/src/test/resources/data/output/NotesIIST_RTF.DTD
A         ctakes-chunker/src/test/resources/data/output/text1.txt.included.xml
A         ctakes-chunker/src/test/resources/data/unit-test.opennlp.chunks
A         ctakes-chunker/src/test/resources/data/text-files
A         ctakes-chunker/src/test/resources/data/text-files/text1.txt
A         ctakes-chunker/src/test/java
A         ctakes-chunker/src/test/java/org
A         ctakes-chunker/src/test/java/org/apache
A         ctakes-chunker/src/test/java/org/apache/ctakes
A         ctakes-chunker/src/test/java/org/apache/ctakes/chunker
A         
ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkAdjusterTests.java
A         
ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkerTests.java
A         ctakes-chunker/src/main
A         ctakes-chunker/src/main/java
A         ctakes-chunker/src/main/java/org
A         ctakes-chunker/src/main/java/org/apache
A         ctakes-chunker/src/main/java/org/apache/ctakes
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster
A         
ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster/ChunkAdjuster.java
A         
ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/ChunkCreator.java
A         
ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/DefaultChunkCreator.java
A         
ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/PhraseTypeChunkCreator.java
A         ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/Chunker.java
A         ctakes-dependency-parser-res
A         ctakes-dependency-parser-res/LICENSE
A         ctakes-dependency-parser-res/src
A         ctakes-dependency-parser-res/src/test
A         ctakes-dependency-parser-res/src/main
A         ctakes-dependency-parser-res/src/main/resources
A         ctakes-dependency-parser-res/src/main/resources/org
A         ctakes-dependency-parser-res/src/main/resources/org/apache
A         ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred
AU        
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README
AU        
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl
AU        
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README
AU        
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role
AU        
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer
A         
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README
AU        
ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
A         ctakes-dependency-parser-res/pom.xml
AU        KEYS
 U        .
At revision 1815625

Parsing POMs
Established TCP socket on 44993
maven35-agent.jar already up to date
maven35-interceptor.jar already up to date
maven3-interceptor-commons.jar already up to date
[ctakes-trunk-Java-1.9] $ /home/jenkins/tools/java/latest1.9/bin/java -Xmx4g 
-Xms256m -Dmaven.test.failure.ignore=false -cp 
/home/jenkins/jenkins-slave/maven35-agent.jar:/home/jenkins/tools/maven/apache-maven-3.5.0/boot/plexus-classworlds-2.5.2.jar:/home/jenkins/tools/maven/apache-maven-3.5.0/conf/logging
 jenkins.maven3.agent.Maven35Main /home/jenkins/tools/maven/apache-maven-3.5.0 
/home/jenkins/jenkins-slave/slave.jar 
/home/jenkins/jenkins-slave/maven35-interceptor.jar 
/home/jenkins/jenkins-slave/maven3-interceptor-commons.jar 44993
ERROR: Failed to parse POMs
java.io.IOException: Cannot run program 
"/home/jenkins/tools/java/latest1.9/bin/java" (in directory 
"<https://builds.apache.org/job/ctakes-trunk-Java-1.9/ws/";)>: error=2, No such 
file or directory
        at java.lang.ProcessBuilder.start(ProcessBuilder.java:1048)
        at hudson.Proc$LocalProc.<init>(Proc.java:249)
        at hudson.Proc$LocalProc.<init>(Proc.java:218)
        at hudson.Launcher$LocalLauncher.launch(Launcher.java:930)
        at hudson.Launcher$ProcStarter.start(Launcher.java:450)
        at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1299)
        at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1260)
        at hudson.remoting.UserRequest.perform(UserRequest.java:181)
        at hudson.remoting.UserRequest.perform(UserRequest.java:52)
        at hudson.remoting.Request$2.run(Request.java:336)
        at 
hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:748)
        at ......remote call to ubuntu-eu3(Native Method)
        at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1554)
        at hudson.remoting.UserResponse.retrieve(UserRequest.java:281)
        at hudson.remoting.Channel.call(Channel.java:839)
        at hudson.Launcher$RemoteLauncher.launch(Launcher.java:1053)
        at hudson.Launcher$ProcStarter.start(Launcher.java:450)
        at 
hudson.maven.AbstractMavenProcessFactory.newProcess(AbstractMavenProcessFactory.java:278)
        at hudson.maven.ProcessCache.get(ProcessCache.java:236)
        at 
hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:804)
        at 
hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496)
        at hudson.model.Run.execute(Run.java:1737)
        at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
        at hudson.model.ResourceController.execute(ResourceController.java:97)
        at hudson.model.Executor.run(Executor.java:419)
Caused by: java.io.IOException: error=2, No such file or directory
        at java.lang.UNIXProcess.forkAndExec(Native Method)
        at java.lang.UNIXProcess.<init>(UNIXProcess.java:247)
        at java.lang.ProcessImpl.start(ProcessImpl.java:134)
        at java.lang.ProcessBuilder.start(ProcessBuilder.java:1029)
        at hudson.Proc$LocalProc.<init>(Proc.java:249)
        at hudson.Proc$LocalProc.<init>(Proc.java:218)
        at hudson.Launcher$LocalLauncher.launch(Launcher.java:930)
        at hudson.Launcher$ProcStarter.start(Launcher.java:450)
        at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1299)
        at hudson.Launcher$RemoteLaunchCallable.call(Launcher.java:1260)
        at hudson.remoting.UserRequest.perform(UserRequest.java:181)
        at hudson.remoting.UserRequest.perform(UserRequest.java:52)
        at hudson.remoting.Request$2.run(Request.java:336)
        at 
hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:748)

Reply via email to