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https://issues.apache.org/jira/browse/CTAKES-490?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16293848#comment-16293848
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mlyNLP edited comment on CTAKES-490 at 12/16/17 3:38 PM:
---------------------------------------------------------
Hello Alex,
By changing '<import name...' to '<import location...' and passing the absolute
path instead of the relative path, solved the problem for me now. But this
shouldn't be the final fix of this problem.
This change made me solve the problem of the JIRA, but right after I have
another error that consists in the following:
*<message>Annotator class "org.apache.ctakes.drugner.ae.DrugMentionAnnotator"
was not found. (Descriptor:
file:/C:/Users/Xxxxx/Desktop/Yyyyy/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>
<exception>
<message>org.apache.uima.resource.ResourceInitializationException:
Annotator class "org.apache.ctakes.drugner.ae.DrugMentionAnnotator" was not
found. (Descriptor:
file:/C:/Users/Xxxxx/Desktop/Yyyyy/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>*
Once again, the class DrugMentionAnnotator being referenced in the
DrugMentionAnnotator.xml physically exists in the given path! This time, even
passing the absolute path, I can't seem to solve the problem.
If you have some advice in how I can solve this new problem I would be
appreciated.
Thanks in advance.
was (Author: mlynlp):
Hello Alex,
By changing '<import name...' to '<import location...' and passing the absolute
path instead of the relative path, solved the problem for me now. But this
shouldn't be the final fix of this problem.
This change made me solve the problem of the JIRA, but right after I have
another error that consists in the following:
*<message>Annotator class "org.apache.ctakes.drugner.ae.DrugMentionAnnotator"
was not found. (Descriptor:
file:/C:/Users/Xxxxx/Desktop/Yyyyy/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>
<exception>
<message>org.apache.uima.resource.ResourceInitializationException:
Annotator class "org.apache.ctakes.drugner.ae.DrugMentionAnnotator" was not
found. (Descriptor:
file:/C:/Users/Xxxxx/Desktop/Yyyyy/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)</message>
*
Once again, the class DrugMentionAnnotator being referenced in the
DrugMentionAnnotator.xml physically exists in the given path! This time, even
passing the absolute path, I can't seem to solve the problem.
If you have some advice in how I can solve this new problem I would be
appreciated.
Thanks in advance.
> cTAKES 4.0.1-SNAPSHOT - Problem with CVD and
> AggregatePlaintextFastUMLSProcessor
> --------------------------------------------------------------------------------
>
> Key: CTAKES-490
> URL: https://issues.apache.org/jira/browse/CTAKES-490
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-clinical-pipeline
> Affects Versions: 4.0.0
> Environment: Local
> Reporter: mlyNLP
> Assignee: Alex Zbarcea
> Fix For: 4.0.0
>
> Attachments: Problem_ProofOne.JPG, Problem_ProofThree.JPG,
> Problem_ProofTwo.JPG
>
>
> Hello,
> I'm aiming to extend cTAKES in order to fulfill the objectives of a project
> I'm working on. So I decided to check out the code of trunk. I followed all
> the steps of the developer's guide found here:
> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+Developer+Install+Guide
> I'm using Intellij by the way. Well, when I launch CVD from Intellij in order
> to test some changes I made in the code, I have a problem. I want to use the
> AggregatePlaintextFastUMLSProcessor. When I try to load it in the CVD UI, I
> have the following error:
> -----------------
>
> <exception>
> <message>org.apache.uima.resource.ResourceInitializationException: An
> import could not be resolved. No file with name
> "org/apache/ctakes/drugner/types/TypeSystem.xml" was found in the class path
> or data path. (Descriptor:
> file:/C:/Users/User/Desktop/Tese_Mestrado_NLP/cTAKES_Project_NLP_Dev/ctakes/ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml)
> -----------------
> I can't understand why this exception happens at all. The
> DrugMentionAnnotator.xml indeed has an import of the TypeSystem.xml file. And
> this TypeSystem.xml file physically exists in the path described in the
> DrugMentionAnnotator.xml import. So, I don't really know why I have this
> error in CVD, since the file that is originating the problem exists indeed in
> the expectable path described in the DrugMentionAnnotator.xml import.
> I also add images as attachments that show the import in the
> DrugMentionAnnotator.xml and the proof that the file being imported (and the
> cause of the exception) actually exists where it should exist.
> Since I have followed all the steps in the Developer's Guide, I consider this
> to be a problem and decided to report it. I'm also blocked at the moment
> because of it.
> If you need additional information don't hesitate in demanding.
> *Expected result:* load AggregatePlaintextFastUMLSProcessor succesfully.
> *Obtained result:* loading AggregatePlaintextFastUMLSProcessor raises an
> exception.
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