Github user meiercaleb commented on a diff in the pull request:

    https://github.com/apache/incubator-rya/pull/172#discussion_r159802759
  
    --- Diff: 
extras/indexing/src/main/java/org/apache/rya/indexing/mongodb/pcj/BasePcjIndexer.java
 ---
    @@ -0,0 +1,138 @@
    +/*
    + * Licensed to the Apache Software Foundation (ASF) under one
    + * or more contributor license agreements.  See the NOTICE file
    + * distributed with this work for additional information
    + * regarding copyright ownership.  The ASF licenses this file
    + * to you under the Apache License, Version 2.0 (the
    + * "License"); you may not use this file except in compliance
    + * with the License.  You may obtain a copy of the License at
    + *
    + *   http://www.apache.org/licenses/LICENSE-2.0
    + *
    + * Unless required by applicable law or agreed to in writing,
    + * software distributed under the License is distributed on an
    + * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
    + * KIND, either express or implied.  See the License for the
    + * specific language governing permissions and limitations
    + * under the License.
    + */
    +package org.apache.rya.indexing.mongodb.pcj;
    +
    +import static com.google.common.base.Preconditions.checkState;
    +import static java.util.Collections.singleton;
    +import static java.util.Objects.requireNonNull;
    +import static java.util.stream.Collectors.groupingBy;
    +
    +import java.io.IOException;
    +import java.util.Collection;
    +import java.util.List;
    +import java.util.Map;
    +import java.util.Map.Entry;
    +import java.util.Set;
    +import java.util.concurrent.atomic.AtomicReference;
    +
    +import org.apache.hadoop.conf.Configuration;
    +import org.apache.rya.api.domain.RyaStatement;
    +import org.apache.rya.api.domain.RyaURI;
    +import org.apache.rya.indexing.entity.model.Entity;
    +import org.apache.rya.indexing.entity.storage.EntityStorage;
    +import 
org.apache.rya.indexing.entity.storage.EntityStorage.EntityStorageException;
    +import org.apache.rya.indexing.pcj.storage.mongo.MongoPcjDocuments;
    +import org.apache.rya.mongodb.MongoDBRdfConfiguration;
    +import org.apache.rya.mongodb.MongoSecondaryIndex;
    +import org.openrdf.model.URI;
    +
    +import edu.umd.cs.findbugs.annotations.DefaultAnnotation;
    +import edu.umd.cs.findbugs.annotations.NonNull;
    +
    +/**
    + * A base class that may be used to update an {@link EntityStorage} as new
    + * {@link RyaStatement}s are added to/removed from the Rya instance.
    + */
    +@DefaultAnnotation(NonNull.class)
    +public abstract class BasePcjIndexer implements PcjIndexer, 
MongoSecondaryIndex {
    +
    +    private final AtomicReference<MongoDBRdfConfiguration> configuration = 
new AtomicReference<>();
    +    private final AtomicReference<MongoPcjDocuments> pcjDocs = new 
AtomicReference<>();
    +
    +    @Override
    +    public void setConf(final Configuration conf) {
    +        requireNonNull(conf);
    +        pcjDocs.set( getPcjStorage(conf) );
    +    }
    +
    +    @Override
    +    public Configuration getConf() {
    +        return configuration.get();
    +    }
    +
    +    @Override
    +    public void storeStatement(final RyaStatement statement) throws 
IOException {
    +        requireNonNull(statement);
    +        storeStatements( singleton(statement) );
    +    }
    +
    +    @Override
    +    public void storeStatements(final Collection<RyaStatement> statements) 
throws IOException {
    +        requireNonNull(statements);
    --- End diff --
    
    Yeah, I don't get what this method or this class is doing.  In the logic 
below, it appears that you are dealing with entities, which is not correct.  
The PCJ indexer feeds the updater statements.  You maintain in your response to 
my comments about the MongoPCJIndexer that this class does all of the "heavy 
lifting".  That seems impossible to me given that this base class appears to 
deal with entities and there is no updater to interact with.  


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