The code for detection of new files in the mailstore and their
addition to the database is moved from notmuch-new.c to
lib/mailstore-files.c, where it is called by the abstract mailstore
interface.

The code was changed to allow the progress reporting function to be
implemented outside of notmuch library.

Signed-off-by: Michal Sojka <sojkam1 at fel.cvut.cz>
---
 lib/mailstore-files.c |  590 +++++++++++++++++++++++++++++++++++++++++++++++
 notmuch-new.c         |  611 ++-----------------------------------------------
 2 files changed, 615 insertions(+), 586 deletions(-)

diff --git a/lib/mailstore-files.c b/lib/mailstore-files.c
index 92d7f5d..ace2664 100644
--- a/lib/mailstore-files.c
+++ b/lib/mailstore-files.c
@@ -20,9 +20,596 @@
  *         Michal Sojka <sojkam1 at fel.cvut.cz>
  */

+#define _GNU_SOURCE            /* For asprintf() */
 #include "notmuch.h"
 #include "mailstore-private.h"
+#include <dirent.h>

+typedef struct _filename_node {
+    char *filename;
+    struct _filename_node *next;
+} _filename_node_t;
+
+typedef struct _filename_list {
+    _filename_node_t *head;
+    _filename_node_t **tail;
+} _filename_list_t;
+
+typedef struct _indexing_context_priv {
+    _filename_list_t *removed_files;
+    _filename_list_t *removed_directories;
+} _indexing_context_priv_t;
+
+static _filename_list_t *
+_filename_list_create (const void *ctx)
+{
+    _filename_list_t *list;
+
+    list = talloc (ctx, _filename_list_t);
+    if (list == NULL)
+       return NULL;
+
+    list->head = NULL;
+    list->tail = &list->head;
+
+    return list;
+}
+
+static void
+_filename_list_add (_filename_list_t *list,
+                   const char *filename)
+{
+    _filename_node_t *node = talloc (list, _filename_node_t);
+
+    node->filename = talloc_strdup (list, filename);
+    node->next = NULL;
+
+    *(list->tail) = node;
+    list->tail = &node->next;
+}
+
+static void
+tag_inbox_and_unread (notmuch_message_t *message)
+{
+    notmuch_message_add_tag (message, "inbox");
+    notmuch_message_add_tag (message, "unread");
+}
+
+static int
+dirent_sort_inode (const struct dirent **a, const struct dirent **b)
+{
+    return ((*a)->d_ino < (*b)->d_ino) ? -1 : 1;
+}
+
+static int
+dirent_sort_strcmp_name (const struct dirent **a, const struct dirent **b)
+{
+    return strcmp ((*a)->d_name, (*b)->d_name);
+}
+
+/* Test if the directory looks like a Maildir directory.
+ *
+ * Search through the array of directory entries to see if we can find all
+ * three subdirectories typical for Maildir, that is "new", "cur", and "tmp".
+ *
+ * Return 1 if the directory looks like a Maildir and 0 otherwise.
+ */
+static int
+_entries_resemble_maildir (struct dirent **entries, int count)
+{
+    int i, found = 0;
+
+    for (i = 0; i < count; i++) {
+       if (entries[i]->d_type != DT_DIR && entries[i]->d_type != DT_UNKNOWN)
+           continue;
+
+       if (strcmp(entries[i]->d_name, "new") == 0 ||
+           strcmp(entries[i]->d_name, "cur") == 0 ||
+           strcmp(entries[i]->d_name, "tmp") == 0)
+       {
+           found++;
+           if (found == 3)
+               return 1;
+       }
+    }
+
+    return 0;
+}
+
+
+/* Examine 'path' recursively as follows:
+ *
+ *   o Ask the filesystem for the mtime of 'path' (fs_mtime)
+ *   o Ask the database for its timestamp of 'path' (db_mtime)
+ *
+ *   o Ask the filesystem for files and directories within 'path'
+ *     (via scandir and stored in fs_entries)
+ *   o Ask the database for files and directories within 'path'
+ *     (db_files and db_subdirs)
+ *
+ *   o Pass 1: For each directory in fs_entries, recursively call into
+ *     this same function.
+ *
+ *   o Pass 2: If 'fs_mtime' > 'db_mtime', then walk fs_entries
+ *     simultaneously with db_files and db_subdirs. Look for one of
+ *     three interesting cases:
+ *
+ *        1. Regular file in fs_entries and not in db_files
+ *            This is a new file to add_message into the database.
+ *
+ *         2. Filename in db_files not in fs_entries.
+ *            This is a file that has been removed from the mail store.
+ *
+ *         3. Directory in db_subdirs not in fs_entries
+ *            This is a directory that has been removed from the mail store.
+ *
+ *     Note that the addition of a directory is not interesting here,
+ *     since that will have been taken care of in pass 1. Also, we
+ *     don't immediately act on file/directory removal since we must
+ *     ensure that in the case of a rename that the new filename is
+ *     added before the old filename is removed, (so that no
+ *     information is lost from the database).
+ *
+ *   o Tell the database to update its time of 'path' to 'fs_mtime'
+ */
+static notmuch_status_t
+add_files_recursive (notmuch_mailstore_t *mailstore,
+                    const char *path,
+                    notmuch_indexing_context_t *state)
+{
+    DIR *dir = NULL;
+    struct dirent *entry = NULL;
+    char *next = NULL;
+    time_t fs_mtime, db_mtime;
+    notmuch_status_t status, ret = NOTMUCH_STATUS_SUCCESS;
+    notmuch_message_t *message = NULL;
+    struct dirent **fs_entries = NULL;
+    int i, num_fs_entries;
+    notmuch_directory_t *directory;
+    notmuch_filenames_t *db_files = NULL;
+    notmuch_filenames_t *db_subdirs = NULL;
+    struct stat st;
+    notmuch_bool_t is_maildir, new_directory;
+    _indexing_context_priv_t *priv = state->priv;
+    notmuch_database_t *notmuch = mailstore->notmuch;
+
+    if (stat (path, &st)) {
+       fprintf (stderr, "Error reading directory %s: %s\n",
+                path, strerror (errno));
+       return NOTMUCH_STATUS_FILE_ERROR;
+    }
+
+    /* This is not an error since we may have recursed based on a
+     * symlink to a regular file, not a directory, and we don't know
+     * that until this stat. */
+    if (! S_ISDIR (st.st_mode))
+       return NOTMUCH_STATUS_SUCCESS;
+
+    fs_mtime = st.st_mtime;
+
+    directory = notmuch_database_get_directory (notmuch, path);
+    db_mtime = notmuch_directory_get_mtime (directory);
+
+    if (db_mtime == 0) {
+       new_directory = TRUE;
+       db_files = NULL;
+       db_subdirs = NULL;
+    } else {
+       new_directory = FALSE;
+       db_files = notmuch_directory_get_child_files (directory);
+       db_subdirs = notmuch_directory_get_child_directories (directory);
+    }
+
+    /* If the database knows about this directory, then we sort based
+     * on strcmp to match the database sorting. Otherwise, we can do
+     * inode-based sorting for faster filesystem operation. */
+    num_fs_entries = scandir (path, &fs_entries, 0,
+                             new_directory ?
+                             dirent_sort_inode : dirent_sort_strcmp_name);
+
+    if (num_fs_entries == -1) {
+       fprintf (stderr, "Error opening directory %s: %s\n",
+                path, strerror (errno));
+       ret = NOTMUCH_STATUS_FILE_ERROR;
+       goto DONE;
+    }
+
+    /* Pass 1: Recurse into all sub-directories. */
+    is_maildir = _entries_resemble_maildir (fs_entries, num_fs_entries);
+
+    for (i = 0; i < num_fs_entries; i++) {
+       if (state->interrupted)
+           break;
+
+       entry = fs_entries[i];
+
+       /* We only want to descend into directories.
+        * But symlinks can be to directories too, of course.
+        *
+        * And if the filesystem doesn't tell us the file type in the
+        * scandir results, then it might be a directory (and if not,
+        * then we'll stat and return immediately in the next level of
+        * recursion). */
+       if (entry->d_type != DT_DIR &&
+           entry->d_type != DT_LNK &&
+           entry->d_type != DT_UNKNOWN)
+       {
+           continue;
+       }
+
+       /* Ignore special directories to avoid infinite recursion.
+        * Also ignore the .notmuch directory and any "tmp" directory
+        * that appears within a maildir.
+        */
+       /* XXX: Eventually we'll want more sophistication to let the
+        * user specify files to be ignored. */
+       if (strcmp (entry->d_name, ".") == 0 ||
+           strcmp (entry->d_name, "..") == 0 ||
+           (is_maildir && strcmp (entry->d_name, "tmp") == 0) ||
+           strcmp (entry->d_name, ".notmuch") ==0)
+       {
+           continue;
+       }
+
+       next = talloc_asprintf (notmuch, "%s/%s", path, entry->d_name);
+       status = add_files_recursive (mailstore, next, state);
+       if (status && ret == NOTMUCH_STATUS_SUCCESS)
+           ret = status;
+       talloc_free (next);
+       next = NULL;
+    }
+
+    /* If this directory hasn't been modified since the last
+     * "notmuch new", then we can skip the second pass entirely. */
+    if (fs_mtime <= db_mtime)
+       goto DONE;
+
+    /* Pass 2: Scan for new files, removed files, and removed directories. */
+    for (i = 0; i < num_fs_entries; i++)
+    {
+       if (state->interrupted)
+           break;
+
+        entry = fs_entries[i];
+
+       /* Check if we've walked past any names in db_files or
+        * db_subdirs. If so, these have been deleted. */
+       while (notmuch_filenames_valid (db_files) &&
+              strcmp (notmuch_filenames_get (db_files), entry->d_name) < 0)
+       {
+           char *absolute = talloc_asprintf (priv->removed_files,
+                                             "%s/%s", path,
+                                             notmuch_filenames_get (db_files));
+
+           _filename_list_add (priv->removed_files, absolute);
+
+           notmuch_filenames_move_to_next (db_files);
+       }
+
+       while (notmuch_filenames_valid (db_subdirs) &&
+              strcmp (notmuch_filenames_get (db_subdirs), entry->d_name) <= 0)
+       {
+           const char *filename = notmuch_filenames_get (db_subdirs);
+
+           if (strcmp (filename, entry->d_name) < 0)
+           {
+               char *absolute = talloc_asprintf (priv->removed_directories,
+                                                 "%s/%s", path, filename);
+
+               _filename_list_add (priv->removed_directories, absolute);
+           }
+
+           notmuch_filenames_move_to_next (db_subdirs);
+       }
+
+       /* If we're looking at a symlink, we only want to add it if it
+        * links to a regular file, (and not to a directory, say).
+        *
+        * Similarly, if the file is of unknown type (due to filesytem
+        * limitations), then we also need to look closer.
+        *
+        * In either case, a stat does the trick.
+        */
+       if (entry->d_type == DT_LNK || entry->d_type == DT_UNKNOWN) {
+           int err;
+
+           next = talloc_asprintf (notmuch, "%s/%s", path, entry->d_name);
+           err = stat (next, &st);
+           talloc_free (next);
+           next = NULL;
+
+           /* Don't emit an error for a link pointing nowhere, since
+            * the directory-traversal pass will have already done
+            * that. */
+           if (err)
+               continue;
+
+           if (! S_ISREG (st.st_mode))
+               continue;
+       } else if (entry->d_type != DT_REG) {
+           continue;
+       }
+
+       /* Don't add a file that we've added before. */
+       if (notmuch_filenames_valid (db_files) &&
+           strcmp (notmuch_filenames_get (db_files), entry->d_name) == 0)
+       {
+           notmuch_filenames_move_to_next (db_files);
+           continue;
+       }
+
+       /* We're now looking at a regular file that doesn't yet exist
+        * in the database, so add it. */
+       next = talloc_asprintf (notmuch, "%s/%s", path, entry->d_name);
+
+       state->processed_files++;
+
+       if (state->verbose) {
+           if (state->output_is_a_tty)
+               printf("\r\033[K");
+
+           printf ("%i/%i: %s",
+                   state->processed_files,
+                   state->total_files,
+                   next);
+
+           putchar((state->output_is_a_tty) ? '\r' : '\n');
+           fflush (stdout);
+       }
+
+       status = notmuch_database_add_message (notmuch, next, &message);
+       switch (status) {
+       /* success */
+       case NOTMUCH_STATUS_SUCCESS:
+           state->added_messages++;
+           tag_inbox_and_unread (message);
+           break;
+       /* Non-fatal issues (go on to next file) */
+       case NOTMUCH_STATUS_DUPLICATE_MESSAGE_ID:
+           /* Stay silent on this one. */
+           break;
+       case NOTMUCH_STATUS_FILE_NOT_EMAIL:
+           fprintf (stderr, "Note: Ignoring non-mail file: %s\n",
+                    next);
+           break;
+       /* Fatal issues. Don't process anymore. */
+       case NOTMUCH_STATUS_READ_ONLY_DATABASE:
+       case NOTMUCH_STATUS_XAPIAN_EXCEPTION:
+       case NOTMUCH_STATUS_OUT_OF_MEMORY:
+           fprintf (stderr, "Error: %s. Halting processing.\n",
+                    notmuch_status_to_string (status));
+           ret = status;
+           goto DONE;
+       default:
+       case NOTMUCH_STATUS_FILE_ERROR:
+       case NOTMUCH_STATUS_NULL_POINTER:
+       case NOTMUCH_STATUS_TAG_TOO_LONG:
+       case NOTMUCH_STATUS_UNBALANCED_FREEZE_THAW:
+       case NOTMUCH_STATUS_LAST_STATUS:
+           INTERNAL_ERROR ("add_message returned unexpected value: %d",  
status);
+           goto DONE;
+       }
+
+       if (message) {
+           notmuch_message_destroy (message);
+           message = NULL;
+       }
+
+       if (state->print_progress &&
+           state->print_progress_cb) {
+           state->print_progress = 0;
+           state->print_progress_cb (state);
+       }
+
+       talloc_free (next);
+       next = NULL;
+    }
+
+    /* FIXME: Handle interrupted - there might be data loss */
+
+    /* Now that we've walked the whole filesystem list, anything left
+     * over in the database lists has been deleted. */
+    while (notmuch_filenames_valid (db_files))
+    {
+       char *absolute = talloc_asprintf (priv->removed_files,
+                                         "%s/%s", path,
+                                         notmuch_filenames_get (db_files));
+
+       _filename_list_add (priv->removed_files, absolute);
+
+       notmuch_filenames_move_to_next (db_files);
+    }
+
+    while (notmuch_filenames_valid (db_subdirs))
+    {
+       char *absolute = talloc_asprintf (priv->removed_directories,
+                                         "%s/%s", path,
+                                         notmuch_filenames_get (db_subdirs));
+
+       _filename_list_add (priv->removed_directories, absolute);
+
+       notmuch_filenames_move_to_next (db_subdirs);
+    }
+
+    if (! state->interrupted) {
+       status = notmuch_directory_set_mtime (directory, fs_mtime);
+       if (status && ret == NOTMUCH_STATUS_SUCCESS)
+           ret = status;
+    }
+
+DONE:
+    if (next)
+       talloc_free (next);
+    if (entry)
+       free (entry);
+    if (dir)
+       closedir (dir);
+    if (fs_entries)
+       free (fs_entries);
+    if (db_subdirs)
+       notmuch_filenames_destroy (db_subdirs);
+    if (db_files)
+       notmuch_filenames_destroy (db_files);
+    if (directory)
+       notmuch_directory_destroy (directory);
+
+    return ret;
+}
+
+/* XXX: This should be merged with the add_files function since it
+ * shares a lot of logic with it. */
+/* Recursively count all regular files in path and all sub-directories
+ * of path.  The result is added to *count (which should be
+ * initialized to zero by the top-level caller before calling
+ * count_files). */
+static void
+count_files (notmuch_mailstore_t *mailstore,
+            const char *path, int *count,
+            volatile sig_atomic_t *interrupted)
+{
+    struct dirent *entry = NULL;
+    char *next;
+    struct stat st;
+    struct dirent **fs_entries = NULL;
+    int num_fs_entries = scandir (path, &fs_entries, 0, dirent_sort_inode);
+    int i = 0;
+
+    (void)mailstore;
+    if (num_fs_entries == -1) {
+       fprintf (stderr, "Warning: failed to open directory %s: %s\n",
+                path, strerror (errno));
+       goto DONE;
+    }
+
+    while (!*interrupted) {
+        if (i == num_fs_entries)
+           break;
+
+        entry = fs_entries[i++];
+
+       /* Ignore special directories to avoid infinite recursion.
+        * Also ignore the .notmuch directory.
+        */
+       /* XXX: Eventually we'll want more sophistication to let the
+        * user specify files to be ignored. */
+       if (strcmp (entry->d_name, ".") == 0 ||
+           strcmp (entry->d_name, "..") == 0 ||
+           strcmp (entry->d_name, ".notmuch") == 0)
+       {
+           continue;
+       }
+
+       if (asprintf (&next, "%s/%s", path, entry->d_name) == -1) {
+           next = NULL;
+           fprintf (stderr, "Error descending from %s to %s: Out of memory\n",
+                    path, entry->d_name);
+           continue;
+       }
+
+       stat (next, &st);
+
+       if (S_ISREG (st.st_mode)) {
+           *count = *count + 1;
+           if (*count % 1000 == 0) {
+               printf ("Found %d files so far.\r", *count);
+               fflush (stdout);
+           }
+       } else if (S_ISDIR (st.st_mode)) {
+           count_files (mailstore, next, count, interrupted);
+       }
+
+       free (next);
+    }
+
+DONE:
+    if (entry)
+       free (entry);
+    if (fs_entries)
+        free (fs_entries);
+}
+
+/* Recursively remove all filenames from the database referring to
+ * 'path' (or to any of its children). */
+static void
+_remove_directory (void *ctx,
+                  notmuch_database_t *notmuch,
+                  const char *path,
+                  int *renamed_files,
+                  int *removed_files)
+{
+    notmuch_directory_t *directory;
+    notmuch_filenames_t *files, *subdirs;
+    notmuch_status_t status;
+    char *absolute;
+
+    directory = notmuch_database_get_directory (notmuch, path);
+
+    for (files = notmuch_directory_get_child_files (directory);
+        notmuch_filenames_valid (files);
+        notmuch_filenames_move_to_next (files))
+    {
+       absolute = talloc_asprintf (ctx, "%s/%s", path,
+                                   notmuch_filenames_get (files));
+       status = notmuch_database_remove_message (notmuch, absolute);
+       if (status == NOTMUCH_STATUS_DUPLICATE_MESSAGE_ID)
+           *renamed_files = *renamed_files + 1;
+       else
+           *removed_files = *removed_files + 1;
+       talloc_free (absolute);
+    }
+
+    for (subdirs = notmuch_directory_get_child_directories (directory);
+        notmuch_filenames_valid (subdirs);
+        notmuch_filenames_move_to_next (subdirs))
+    {
+       absolute = talloc_asprintf (ctx, "%s/%s", path,
+                                   notmuch_filenames_get (subdirs));
+       _remove_directory (ctx, notmuch, absolute, renamed_files, 
removed_files);
+       talloc_free (absolute);
+    }
+
+    notmuch_directory_destroy (directory);
+}
+
+static notmuch_private_status_t
+index_new(notmuch_mailstore_t *mailstore, const char* path,
+         notmuch_indexing_context_t *indexing_ctx)
+{
+    _indexing_context_priv_t *priv;
+    _filename_node_t *f;
+    notmuch_status_t status, ret;
+    notmuch_database_t *notmuch = mailstore->notmuch;
+
+    priv = talloc(NULL, _indexing_context_priv_t);
+    indexing_ctx->priv = priv;
+    if (priv == NULL)
+       return NOTMUCH_STATUS_OUT_OF_MEMORY;
+
+    priv->removed_files = _filename_list_create (priv);
+    priv->removed_directories = _filename_list_create (priv);
+
+    ret = add_files_recursive(mailstore, path, indexing_ctx);
+
+    indexing_ctx->removed_files = 0;
+    indexing_ctx->renamed_files = 0;
+    for (f = priv->removed_files->head; f; f = f->next) {
+       status = notmuch_database_remove_message (notmuch, f->filename);
+       if (status == NOTMUCH_STATUS_DUPLICATE_MESSAGE_ID)
+           indexing_ctx->renamed_files++;
+       else
+           indexing_ctx->removed_files++;
+    }
+
+    for (f = priv->removed_directories->head; f; f = f->next) {
+       _remove_directory (priv, notmuch, f->filename,
+                          &indexing_ctx->renamed_files,
+                          &indexing_ctx->removed_files);
+    }
+
+    talloc_free(priv);
+
+    return ret;
+}

 static FILE *
 open_file(notmuch_mailstore_t *mailstore, const char *filename)
@@ -39,5 +626,8 @@ open_file(notmuch_mailstore_t *mailstore, const char 
*filename)
 /* Original notmuch mail store */
 struct _notmuch_mailstore mailstore_files = {
     .type = "files",
+    .count_files = count_files,
+    .index_new = index_new,
+    .sync_tags = NULL,
     .open_file = open_file,
 };
diff --git a/notmuch-new.c b/notmuch-new.c
index 2d0ba6c..ede0859 100644
--- a/notmuch-new.c
+++ b/notmuch-new.c
@@ -22,35 +22,12 @@

 #include <unistd.h>

-typedef struct _filename_node {
-    char *filename;
-    struct _filename_node *next;
-} _filename_node_t;
-
-typedef struct _filename_list {
-    _filename_node_t *head;
-    _filename_node_t **tail;
-} _filename_list_t;
-
-typedef struct {
-    int output_is_a_tty;
-    int verbose;
-
-    int total_files;
-    int processed_files;
-    int added_messages;
-    struct timeval tv_start;
-
-    _filename_list_t *removed_files;
-    _filename_list_t *removed_directories;
-} add_files_state_t;
-
-static volatile sig_atomic_t do_add_files_print_progress = 0;
+notmuch_indexing_context_t *indexing_ctx;

 static void
 handle_sigalrm (unused (int signal))
 {
-    do_add_files_print_progress = 1;
+    indexing_ctx->print_progress = 1;
 }

 static volatile sig_atomic_t interrupted;
@@ -62,46 +39,11 @@ handle_sigint (unused (int sig))
     static char msg[] = "Stopping...         \n";

     ignored = write(2, msg, sizeof(msg)-1);
-    interrupted = 1;
-}
-
-static _filename_list_t *
-_filename_list_create (const void *ctx)
-{
-    _filename_list_t *list;
-
-    list = talloc (ctx, _filename_list_t);
-    if (list == NULL)
-       return NULL;
-
-    list->head = NULL;
-    list->tail = &list->head;
-
-    return list;
-}
-
-static void
-_filename_list_add (_filename_list_t *list,
-                   const char *filename)
-{
-    _filename_node_t *node = talloc (list, _filename_node_t);
-
-    node->filename = talloc_strdup (list, filename);
-    node->next = NULL;
-
-    *(list->tail) = node;
-    list->tail = &node->next;
+    indexing_ctx->interrupted = 1;
 }

 static void
-tag_inbox_and_unread (notmuch_message_t *message)
-{
-    notmuch_message_add_tag (message, "inbox");
-    notmuch_message_add_tag (message, "unread");
-}
-
-static void
-add_files_print_progress (add_files_state_t *state)
+add_files_print_progress (notmuch_indexing_context_t *state)
 {
     struct timeval tv_now;
     double elapsed_overall, rate_overall;
@@ -128,388 +70,13 @@ add_files_print_progress (add_files_state_t *state)
     fflush (stdout);
 }

-static int
-dirent_sort_inode (const struct dirent **a, const struct dirent **b)
-{
-    return ((*a)->d_ino < (*b)->d_ino) ? -1 : 1;
-}
-
-static int
-dirent_sort_strcmp_name (const struct dirent **a, const struct dirent **b)
-{
-    return strcmp ((*a)->d_name, (*b)->d_name);
-}
-
-/* Test if the directory looks like a Maildir directory.
- *
- * Search through the array of directory entries to see if we can find all
- * three subdirectories typical for Maildir, that is "new", "cur", and "tmp".
- *
- * Return 1 if the directory looks like a Maildir and 0 otherwise.
- */
-static int
-_entries_resemble_maildir (struct dirent **entries, int count)
-{
-    int i, found = 0;
-
-    for (i = 0; i < count; i++) {
-       if (entries[i]->d_type != DT_DIR && entries[i]->d_type != DT_UNKNOWN)
-           continue;
-
-       if (strcmp(entries[i]->d_name, "new") == 0 ||
-           strcmp(entries[i]->d_name, "cur") == 0 ||
-           strcmp(entries[i]->d_name, "tmp") == 0)
-       {
-           found++;
-           if (found == 3)
-               return 1;
-       }
-    }
-
-    return 0;
-}
-
-/* Examine 'path' recursively as follows:
- *
- *   o Ask the filesystem for the mtime of 'path' (fs_mtime)
- *   o Ask the database for its timestamp of 'path' (db_mtime)
- *
- *   o Ask the filesystem for files and directories within 'path'
- *     (via scandir and stored in fs_entries)
- *   o Ask the database for files and directories within 'path'
- *     (db_files and db_subdirs)
- *
- *   o Pass 1: For each directory in fs_entries, recursively call into
- *     this same function.
- *
- *   o Pass 2: If 'fs_mtime' > 'db_mtime', then walk fs_entries
- *     simultaneously with db_files and db_subdirs. Look for one of
- *     three interesting cases:
- *
- *        1. Regular file in fs_entries and not in db_files
- *            This is a new file to add_message into the database.
- *
- *         2. Filename in db_files not in fs_entries.
- *            This is a file that has been removed from the mail store.
- *
- *         3. Directory in db_subdirs not in fs_entries
- *            This is a directory that has been removed from the mail store.
- *
- *     Note that the addition of a directory is not interesting here,
- *     since that will have been taken care of in pass 1. Also, we
- *     don't immediately act on file/directory removal since we must
- *     ensure that in the case of a rename that the new filename is
- *     added before the old filename is removed, (so that no
- *     information is lost from the database).
- *
- *   o Tell the database to update its time of 'path' to 'fs_mtime'
- */
-static notmuch_status_t
-add_files_recursive (notmuch_database_t *notmuch,
-                    const char *path,
-                    add_files_state_t *state)
-{
-    DIR *dir = NULL;
-    struct dirent *entry = NULL;
-    char *next = NULL;
-    time_t fs_mtime, db_mtime;
-    notmuch_status_t status, ret = NOTMUCH_STATUS_SUCCESS;
-    notmuch_message_t *message = NULL;
-    struct dirent **fs_entries = NULL;
-    int i, num_fs_entries;
-    notmuch_directory_t *directory;
-    notmuch_filenames_t *db_files = NULL;
-    notmuch_filenames_t *db_subdirs = NULL;
-    struct stat st;
-    notmuch_bool_t is_maildir, new_directory;
-
-    if (stat (path, &st)) {
-       fprintf (stderr, "Error reading directory %s: %s\n",
-                path, strerror (errno));
-       return NOTMUCH_STATUS_FILE_ERROR;
-    }
-
-    /* This is not an error since we may have recursed based on a
-     * symlink to a regular file, not a directory, and we don't know
-     * that until this stat. */
-    if (! S_ISDIR (st.st_mode))
-       return NOTMUCH_STATUS_SUCCESS;
-
-    fs_mtime = st.st_mtime;
-
-    directory = notmuch_database_get_directory (notmuch, path);
-    db_mtime = notmuch_directory_get_mtime (directory);
-
-    if (db_mtime == 0) {
-       new_directory = TRUE;
-       db_files = NULL;
-       db_subdirs = NULL;
-    } else {
-       new_directory = FALSE;
-       db_files = notmuch_directory_get_child_files (directory);
-       db_subdirs = notmuch_directory_get_child_directories (directory);
-    }
-
-    /* If the database knows about this directory, then we sort based
-     * on strcmp to match the database sorting. Otherwise, we can do
-     * inode-based sorting for faster filesystem operation. */
-    num_fs_entries = scandir (path, &fs_entries, 0,
-                             new_directory ?
-                             dirent_sort_inode : dirent_sort_strcmp_name);
-
-    if (num_fs_entries == -1) {
-       fprintf (stderr, "Error opening directory %s: %s\n",
-                path, strerror (errno));
-       ret = NOTMUCH_STATUS_FILE_ERROR;
-       goto DONE;
-    }
-
-    /* Pass 1: Recurse into all sub-directories. */
-    is_maildir = _entries_resemble_maildir (fs_entries, num_fs_entries);
-
-    for (i = 0; i < num_fs_entries; i++) {
-       if (interrupted)
-           break;
-
-       entry = fs_entries[i];
-
-       /* We only want to descend into directories.
-        * But symlinks can be to directories too, of course.
-        *
-        * And if the filesystem doesn't tell us the file type in the
-        * scandir results, then it might be a directory (and if not,
-        * then we'll stat and return immediately in the next level of
-        * recursion). */
-       if (entry->d_type != DT_DIR &&
-           entry->d_type != DT_LNK &&
-           entry->d_type != DT_UNKNOWN)
-       {
-           continue;
-       }
-
-       /* Ignore special directories to avoid infinite recursion.
-        * Also ignore the .notmuch directory and any "tmp" directory
-        * that appears within a maildir.
-        */
-       /* XXX: Eventually we'll want more sophistication to let the
-        * user specify files to be ignored. */
-       if (strcmp (entry->d_name, ".") == 0 ||
-           strcmp (entry->d_name, "..") == 0 ||
-           (is_maildir && strcmp (entry->d_name, "tmp") == 0) ||
-           strcmp (entry->d_name, ".notmuch") ==0)
-       {
-           continue;
-       }
-
-       next = talloc_asprintf (notmuch, "%s/%s", path, entry->d_name);
-       status = add_files_recursive (notmuch, next, state);
-       if (status && ret == NOTMUCH_STATUS_SUCCESS)
-           ret = status;
-       talloc_free (next);
-       next = NULL;
-    }
-
-    /* If this directory hasn't been modified since the last
-     * "notmuch new", then we can skip the second pass entirely. */
-    if (fs_mtime <= db_mtime)
-       goto DONE;
-
-    /* Pass 2: Scan for new files, removed files, and removed directories. */
-    for (i = 0; i < num_fs_entries; i++)
-    {
-       if (interrupted)
-           break;
-
-        entry = fs_entries[i];
-
-       /* Check if we've walked past any names in db_files or
-        * db_subdirs. If so, these have been deleted. */
-       while (notmuch_filenames_valid (db_files) &&
-              strcmp (notmuch_filenames_get (db_files), entry->d_name) < 0)
-       {
-           char *absolute = talloc_asprintf (state->removed_files,
-                                             "%s/%s", path,
-                                             notmuch_filenames_get (db_files));
-
-           _filename_list_add (state->removed_files, absolute);
-
-           notmuch_filenames_move_to_next (db_files);
-       }
-
-       while (notmuch_filenames_valid (db_subdirs) &&
-              strcmp (notmuch_filenames_get (db_subdirs), entry->d_name) <= 0)
-       {
-           const char *filename = notmuch_filenames_get (db_subdirs);
-
-           if (strcmp (filename, entry->d_name) < 0)
-           {
-               char *absolute = talloc_asprintf (state->removed_directories,
-                                                 "%s/%s", path, filename);
-
-               _filename_list_add (state->removed_directories, absolute);
-           }
-
-           notmuch_filenames_move_to_next (db_subdirs);
-       }
-
-       /* If we're looking at a symlink, we only want to add it if it
-        * links to a regular file, (and not to a directory, say).
-        *
-        * Similarly, if the file is of unknown type (due to filesytem
-        * limitations), then we also need to look closer.
-        *
-        * In either case, a stat does the trick.
-        */
-       if (entry->d_type == DT_LNK || entry->d_type == DT_UNKNOWN) {
-           int err;
-
-           next = talloc_asprintf (notmuch, "%s/%s", path, entry->d_name);
-           err = stat (next, &st);
-           talloc_free (next);
-           next = NULL;
-
-           /* Don't emit an error for a link pointing nowhere, since
-            * the directory-traversal pass will have already done
-            * that. */
-           if (err)
-               continue;
-
-           if (! S_ISREG (st.st_mode))
-               continue;
-       } else if (entry->d_type != DT_REG) {
-           continue;
-       }
-
-       /* Don't add a file that we've added before. */
-       if (notmuch_filenames_valid (db_files) &&
-           strcmp (notmuch_filenames_get (db_files), entry->d_name) == 0)
-       {
-           notmuch_filenames_move_to_next (db_files);
-           continue;
-       }
-
-       /* We're now looking at a regular file that doesn't yet exist
-        * in the database, so add it. */
-       next = talloc_asprintf (notmuch, "%s/%s", path, entry->d_name);
-
-       state->processed_files++;
-
-       if (state->verbose) {
-           if (state->output_is_a_tty)
-               printf("\r\033[K");
-
-           printf ("%i/%i: %s",
-                   state->processed_files,
-                   state->total_files,
-                   next);
-
-           putchar((state->output_is_a_tty) ? '\r' : '\n');
-           fflush (stdout);
-       }
-
-       status = notmuch_database_add_message (notmuch, next, &message);
-       switch (status) {
-       /* success */
-       case NOTMUCH_STATUS_SUCCESS:
-           state->added_messages++;
-           tag_inbox_and_unread (message);
-           break;
-       /* Non-fatal issues (go on to next file) */
-       case NOTMUCH_STATUS_DUPLICATE_MESSAGE_ID:
-           /* Stay silent on this one. */
-           break;
-       case NOTMUCH_STATUS_FILE_NOT_EMAIL:
-           fprintf (stderr, "Note: Ignoring non-mail file: %s\n",
-                    next);
-           break;
-       /* Fatal issues. Don't process anymore. */
-       case NOTMUCH_STATUS_READ_ONLY_DATABASE:
-       case NOTMUCH_STATUS_XAPIAN_EXCEPTION:
-       case NOTMUCH_STATUS_OUT_OF_MEMORY:
-           fprintf (stderr, "Error: %s. Halting processing.\n",
-                    notmuch_status_to_string (status));
-           ret = status;
-           goto DONE;
-       default:
-       case NOTMUCH_STATUS_FILE_ERROR:
-       case NOTMUCH_STATUS_NULL_POINTER:
-       case NOTMUCH_STATUS_TAG_TOO_LONG:
-       case NOTMUCH_STATUS_UNBALANCED_FREEZE_THAW:
-       case NOTMUCH_STATUS_LAST_STATUS:
-           INTERNAL_ERROR ("add_message returned unexpected value: %d",  
status);
-           goto DONE;
-       }
-
-       if (message) {
-           notmuch_message_destroy (message);
-           message = NULL;
-       }
-
-       if (do_add_files_print_progress) {
-           do_add_files_print_progress = 0;
-           add_files_print_progress (state);
-       }
-
-       talloc_free (next);
-       next = NULL;
-    }
-
-    /* Now that we've walked the whole filesystem list, anything left
-     * over in the database lists has been deleted. */
-    while (notmuch_filenames_valid (db_files))
-    {
-       char *absolute = talloc_asprintf (state->removed_files,
-                                         "%s/%s", path,
-                                         notmuch_filenames_get (db_files));
-
-       _filename_list_add (state->removed_files, absolute);
-
-       notmuch_filenames_move_to_next (db_files);
-    }
-
-    while (notmuch_filenames_valid (db_subdirs))
-    {
-       char *absolute = talloc_asprintf (state->removed_directories,
-                                         "%s/%s", path,
-                                         notmuch_filenames_get (db_subdirs));
-
-       _filename_list_add (state->removed_directories, absolute);
-
-       notmuch_filenames_move_to_next (db_subdirs);
-    }
-
-    if (! interrupted) {
-       status = notmuch_directory_set_mtime (directory, fs_mtime);
-       if (status && ret == NOTMUCH_STATUS_SUCCESS)
-           ret = status;
-    }
-
-  DONE:
-    if (next)
-       talloc_free (next);
-    if (entry)
-       free (entry);
-    if (dir)
-       closedir (dir);
-    if (fs_entries)
-       free (fs_entries);
-    if (db_subdirs)
-       notmuch_filenames_destroy (db_subdirs);
-    if (db_files)
-       notmuch_filenames_destroy (db_files);
-    if (directory)
-       notmuch_directory_destroy (directory);
-
-    return ret;
-}
-
 /* This is the top-level entry point for add_files. It does a couple
  * of error checks, sets up the progress-printing timer and then calls
  * into the recursive function. */
 static notmuch_status_t
-add_files (notmuch_database_t *notmuch,
+add_files (notmuch_mailstore_t *mailstore,
           const char *path,
-          add_files_state_t *state)
+          notmuch_indexing_context_t *state) /* FIXME: rename */
 {
     notmuch_status_t status;
     struct sigaction action;
@@ -517,6 +84,9 @@ add_files (notmuch_database_t *notmuch,
     notmuch_bool_t timer_is_active = FALSE;
     struct stat st;

+    state->print_progress = 0;
+    state->print_progress_cb = add_files_print_progress;
+
     if (state->output_is_a_tty && ! debugger_is_active () && ! state->verbose) 
{
        /* Setup our handler for SIGALRM */
        memset (&action, 0, sizeof (struct sigaction));
@@ -546,7 +116,7 @@ add_files (notmuch_database_t *notmuch,
        return NOTMUCH_STATUS_FILE_ERROR;
     }

-    status = add_files_recursive (notmuch, path, state);
+    status = notmuch_mailstore_index_new (mailstore, path, state);

     if (timer_is_active) {
        /* Now stop the timer. */
@@ -564,80 +134,11 @@ add_files (notmuch_database_t *notmuch,
     return status;
 }

-/* XXX: This should be merged with the add_files function since it
- * shares a lot of logic with it. */
-/* Recursively count all regular files in path and all sub-directories
- * of path.  The result is added to *count (which should be
- * initialized to zero by the top-level caller before calling
- * count_files). */
-static void
-count_files (const char *path, int *count)
-{
-    struct dirent *entry = NULL;
-    char *next;
-    struct stat st;
-    struct dirent **fs_entries = NULL;
-    int num_fs_entries = scandir (path, &fs_entries, 0, dirent_sort_inode);
-    int i = 0;
-
-    if (num_fs_entries == -1) {
-       fprintf (stderr, "Warning: failed to open directory %s: %s\n",
-                path, strerror (errno));
-       goto DONE;
-    }
-
-    while (!interrupted) {
-        if (i == num_fs_entries)
-           break;
-
-        entry = fs_entries[i++];
-
-       /* Ignore special directories to avoid infinite recursion.
-        * Also ignore the .notmuch directory.
-        */
-       /* XXX: Eventually we'll want more sophistication to let the
-        * user specify files to be ignored. */
-       if (strcmp (entry->d_name, ".") == 0 ||
-           strcmp (entry->d_name, "..") == 0 ||
-           strcmp (entry->d_name, ".notmuch") == 0)
-       {
-           continue;
-       }
-
-       if (asprintf (&next, "%s/%s", path, entry->d_name) == -1) {
-           next = NULL;
-           fprintf (stderr, "Error descending from %s to %s: Out of memory\n",
-                    path, entry->d_name);
-           continue;
-       }
-
-       stat (next, &st);
-
-       if (S_ISREG (st.st_mode)) {
-           *count = *count + 1;
-           if (*count % 1000 == 0) {
-               printf ("Found %d files so far.\r", *count);
-               fflush (stdout);
-           }
-       } else if (S_ISDIR (st.st_mode)) {
-           count_files (next, count);
-       }
-
-       free (next);
-    }
-
-  DONE:
-    if (entry)
-       free (entry);
-    if (fs_entries)
-        free (fs_entries);
-}
-
 static void
 upgrade_print_progress (void *closure,
                        double progress)
 {
-    add_files_state_t *state = closure;
+    notmuch_indexing_context_t *state = closure;

     printf ("Upgrading database: %.2f%% complete", progress * 100.0);

@@ -659,55 +160,12 @@ upgrade_print_progress (void *closure,
     fflush (stdout);
 }

-/* Recursively remove all filenames from the database referring to
- * 'path' (or to any of its children). */
-static void
-_remove_directory (void *ctx,
-                  notmuch_database_t *notmuch,
-                  const char *path,
-                  int *renamed_files,
-                  int *removed_files)
-{
-    notmuch_directory_t *directory;
-    notmuch_filenames_t *files, *subdirs;
-    notmuch_status_t status;
-    char *absolute;
-
-    directory = notmuch_database_get_directory (notmuch, path);
-
-    for (files = notmuch_directory_get_child_files (directory);
-        notmuch_filenames_valid (files);
-        notmuch_filenames_move_to_next (files))
-    {
-       absolute = talloc_asprintf (ctx, "%s/%s", path,
-                                   notmuch_filenames_get (files));
-       status = notmuch_database_remove_message (notmuch, absolute);
-       if (status == NOTMUCH_STATUS_DUPLICATE_MESSAGE_ID)
-           *renamed_files = *renamed_files + 1;
-       else
-           *removed_files = *removed_files + 1;
-       talloc_free (absolute);
-    }
-
-    for (subdirs = notmuch_directory_get_child_directories (directory);
-        notmuch_filenames_valid (subdirs);
-        notmuch_filenames_move_to_next (subdirs))
-    {
-       absolute = talloc_asprintf (ctx, "%s/%s", path,
-                                   notmuch_filenames_get (subdirs));
-       _remove_directory (ctx, notmuch, absolute, renamed_files, 
removed_files);
-       talloc_free (absolute);
-    }
-
-    notmuch_directory_destroy (directory);
-}
-
 int
 notmuch_new_command (void *ctx, int argc, char *argv[])
 {
     notmuch_config_t *config;
     notmuch_database_t *notmuch;
-    add_files_state_t add_files_state;
+    notmuch_indexing_context_t add_files_state; /* FIXME: Rename */
     double elapsed;
     struct timeval tv_now;
     int ret = 0;
@@ -715,10 +173,10 @@ notmuch_new_command (void *ctx, int argc, char *argv[])
     const char *db_path;
     char *dot_notmuch_path;
     struct sigaction action;
-    _filename_node_t *f;
-    int renamed_files, removed_files;
-    notmuch_status_t status;
     int i;
+    notmuch_mailstore_t *mailstore;
+
+    indexing_ctx = &add_files_state;

     add_files_state.verbose = 0;
     add_files_state.output_is_a_tty = isatty (fileno (stdout));
@@ -737,6 +195,7 @@ notmuch_new_command (void *ctx, int argc, char *argv[])
        return 1;

     db_path = notmuch_config_get_database_path (config);
+    mailstore = notmuch_config_get_mailstore (config);

     dot_notmuch_path = talloc_asprintf (ctx, "%s/%s", db_path, ".notmuch");

@@ -744,7 +203,7 @@ notmuch_new_command (void *ctx, int argc, char *argv[])
        int count;

        count = 0;
-       count_files (db_path, &count);
+       notmuch_mailstore_count_files (mailstore, db_path, &count, 
&interrupted);
        if (interrupted)
            return 1;

@@ -777,6 +236,7 @@ notmuch_new_command (void *ctx, int argc, char *argv[])
     /* Setup our handler for SIGINT. We do this after having
      * potentially done a database upgrade we this interrupt handler
      * won't support. */
+    add_files_state.interrupted = 0;
     memset (&action, 0, sizeof (struct sigaction));
     action.sa_handler = handle_sigint;
     sigemptyset (&action.sa_mask);
@@ -790,28 +250,7 @@ notmuch_new_command (void *ctx, int argc, char *argv[])
     add_files_state.added_messages = 0;
     gettimeofday (&add_files_state.tv_start, NULL);

-    add_files_state.removed_files = _filename_list_create (ctx);
-    add_files_state.removed_directories = _filename_list_create (ctx);
-
-    ret = add_files (notmuch, db_path, &add_files_state);
-
-    removed_files = 0;
-    renamed_files = 0;
-    for (f = add_files_state.removed_files->head; f; f = f->next) {
-       status = notmuch_database_remove_message (notmuch, f->filename);
-       if (status == NOTMUCH_STATUS_DUPLICATE_MESSAGE_ID)
-           renamed_files++;
-       else
-           removed_files++;
-    }
-
-    for (f = add_files_state.removed_directories->head; f; f = f->next) {
-       _remove_directory (ctx, notmuch, f->filename,
-                          &renamed_files, &removed_files);
-    }
-
-    talloc_free (add_files_state.removed_files);
-    talloc_free (add_files_state.removed_directories);
+    ret = add_files (mailstore, db_path, &add_files_state);

     gettimeofday (&tv_now, NULL);
     elapsed = notmuch_time_elapsed (add_files_state.tv_start,
@@ -839,16 +278,16 @@ notmuch_new_command (void *ctx, int argc, char *argv[])
        printf ("No new mail.");
     }

-    if (removed_files) {
+    if (add_files_state.removed_files) {
        printf (" Removed %d %s.",
-               removed_files,
-               removed_files == 1 ? "message" : "messages");
+               add_files_state.removed_files,
+               add_files_state.removed_files == 1 ? "message" : "messages");
     }

-    if (renamed_files) {
+    if (add_files_state.renamed_files) {
        printf (" Detected %d file %s.",
-               renamed_files,
-               renamed_files == 1 ? "rename" : "renames");
+               add_files_state.renamed_files,
+               add_files_state.renamed_files == 1 ? "rename" : "renames");
     }

     printf ("\n");
-- 
1.7.0

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