Might not be the best way but i found this to work after copying nodes to a new
file (scriptPath) :
#####Copy Project settings#######
currScript = nuke.Root().name()
## Get Root Settings
with open(currScript, 'r') as f:
readScript = f.read()
f.closed
readRoot_long = readScript[readScript.find('Root {'):]
readRoot = readRoot_long[:readRoot_long.find('}')]
rootSett = readRoot + '\n}'
print rootSett
## Copy to new file
f = open(scriptPath, 'r')
temp = f.read()
f.close()
f = open(scriptPath, 'w')
f.write(rootSett)
f.write('\n' + temp)
f.close()
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