On Tue, Jun 21, 2011 at 3:55 AM, Bruce Southey <bsout...@gmail.com> wrote:
> On Mon, Jun 20, 2011 at 2:43 PM, Ralf Gommers > <ralf.gomm...@googlemail.com> wrote: > > > > > > On Mon, Jun 20, 2011 at 8:50 PM, Bruce Southey <bsout...@gmail.com> > wrote: > >> > >> I copied the files but that just moves the problem. So that patch is > >> incorrect. > >> > >> I get the same errors on Fedora 15 supplied Python3.2 for numpy 1.6.0 > and > >> using git from 'https://github.com/rgommers/numpy.git'. Numpy is > getting > >> Fedora supplied Atlas (1.5.1 does not). > >> > >> It appears that there is a misunderstanding of the PEP because 'SO' and > >> 'SOABI' do exactly what the PEP says on my systems: > > > > It doesn't on OS X. But that's not even the issue. As I explained before, > > the issue is that get_config_var('SO') is used to determine the extension > of > > system libraries (such as liblapack.so) and python-related ones (such as > > multiarray.cpython-32m.so). And the current functions don't do > mindreading. > >> > >> >>> from distutils import sysconfig sysconfig.get_config_var('SO') > >> '.cpython-32m.so' > >> >>> sysconfig.get_config_var('SOABI') > >> 'cpython-32m' > >> > >> Consequently, the name, 'multiarray.pyd', created within numpy is > invalid. > > > > I removed the line in ctypeslib that was trying this, so I think you are > not > > testing my patch. > > > > Ralf > > > >> > >> Looking the code, I see this line which makes no sense given that the > >> second part is true under Linux: > >> > >> if (not is_python_ext) and 'SOABI' in > >> distutils.sysconfig.get_config_vars(): > >> > >> So I think the 'get_shared_lib_extension' function is wrong and probably > >> unneeded. > >> > >> > >> Bruce > >> > > Just to show that this is the new version, I added two print > statements in the 'get_shared_lib_extension' function: > >>> from numpy.distutils.misc_util import get_shared_lib_extension > >>> get_shared_lib_extension(True) > first so_ext .cpython-32mu.so > returned so_ext .cpython-32mu.so > '.cpython-32mu.so' > >>> get_shared_lib_extension(False) > first so_ext .cpython-32mu.so > returned so_ext .so > '.so' > This all looks correct. Before you were saying you were still getting 'multiarray.pyd', now your error says 'multiarray.so'. So now you are testing the right thing. Test test_basic2() in test_ctypeslib was fixed, but I forgot to fix it in two other places. I updated both my branches on github, please try again. > > The reason for the same location is obvious because all the patch does > is move the code to get the extension into that function. So the > 'get_shared_lib_extension' function returns the extension '.so' to the > load_library function. However that name is wrong under Linux as it > has to be 'multiarray.cpython-32mu.so' and hence the error in the same > location. I did come across this thread > 'http://bugs.python.org/issue10262' which indicates why Linux is > different by default. > > So what is the actual name of the multiarray shared library with the Mac? > If it is ' 'multiarray.so' then the correct name is "libname + > sysconfig.get_config_var('SO')" as I previously indicated. > > It is, and yes that's correct. Orthogonal to the actual issue though. Ralf > > Bruce > > > > > $ python3 > Python 3.2 (r32:88445, Feb 21 2011, 21:11:06) > [GCC 4.6.0 20110212 (Red Hat 4.6.0-0.7)] on linux2 > Type "help", "copyright", "credits" or "license" for more information. > >>> import numpy as np > >>> np.test() > Running unit tests for numpy > NumPy version 2.0.0.dev-Unknown > NumPy is installed in /usr/lib64/python3.2/site-packages/numpy > Python version 3.2 (r32:88445, Feb 21 2011, 21:11:06) [GCC 4.6.0 > 20110212 (Red Hat 4.6.0-0.7)] > nose version 1.0.0 > first so_ext .cpython-32mu.so > returned so_ext .so > > ...F.......S......F.....E..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................K............................................................................................................................................................................................K..................................................................................................K......................K...........................................................................................first > so_ext .cpython-32mu.so > returned so_ext .so > > ...............S..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................../usr/lib64/python3.2/site-packages/numpy/lib/format.py:575: > ResourceWarning: unclosed file <_io.BufferedReader > name='/tmp/tmpw661ug'> > mode=mode, offset=offset) > > .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................../usr/lib64/python3.2/subprocess.py:460: > ResourceWarning: unclosed file <_io.BufferedReader name=3> > return Popen(*popenargs, **kwargs).wait() > /usr/lib64/python3.2/subprocess.py:460: ResourceWarning: unclosed file > <_io.BufferedReader name=8> > return Popen(*popenargs, **kwargs).wait() > > ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................first > so_ext .cpython-32mu.so > returned so_ext .so > E........ > ====================================================================== > ERROR: test_datetime_divide (test_datetime.TestDateTime) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/usr/lib64/python3.2/site-packages/numpy/core/tests/test_datetime.py", > line 762, in test_datetime_divide > assert_equal(tda / tdb, 6.0 / 9.0) > TypeError: internal error: could not find appropriate datetime inner > loop in true_divide ufunc > > ====================================================================== > ERROR: Failure: OSError > (/usr/lib64/python3.2/site-packages/numpy/core/multiarray.so: cannot > open shared object file: No such file or directory) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/usr/lib/python3.2/site-packages/nose-1.0.0-py3.2.egg/nose/failure.py", > line 37, in runTest > raise self.exc_class(self.exc_val).with_traceback(self.tb) > File > "/usr/lib/python3.2/site-packages/nose-1.0.0-py3.2.egg/nose/loader.py", > line 390, in loadTestsFromName > addr.filename, addr.module) > File > "/usr/lib/python3.2/site-packages/nose-1.0.0-py3.2.egg/nose/importer.py", > line 39, in importFromPath > return self.importFromDir(dir_path, fqname) > File > "/usr/lib/python3.2/site-packages/nose-1.0.0-py3.2.egg/nose/importer.py", > line 86, in importFromDir > mod = load_module(part_fqname, fh, filename, desc) > File "/usr/lib64/python3.2/site-packages/numpy/tests/test_ctypeslib.py", > line 9, in <module> > cdll = load_library('multiarray', np.core.multiarray.__file__) > File "/usr/lib64/python3.2/site-packages/numpy/ctypeslib.py", line > 124, in load_library > raise exc > File "/usr/lib64/python3.2/site-packages/numpy/ctypeslib.py", line > 121, in load_library > return ctypes.cdll[libpath] > File "/usr/lib64/python3.2/ctypes/__init__.py", line 415, in __getitem__ > return getattr(self, name) > File "/usr/lib64/python3.2/ctypes/__init__.py", line 410, in __getattr__ > dll = self._dlltype(name) > File "/usr/lib64/python3.2/ctypes/__init__.py", line 340, in __init__ > self._handle = _dlopen(self._name, mode) > OSError: /usr/lib64/python3.2/site-packages/numpy/core/multiarray.so: > cannot open shared object file: No such file or directory > > ====================================================================== > FAIL: Test custom format function for each element in array. > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/usr/lib64/python3.2/site-packages/numpy/core/tests/test_arrayprint.py", > line 86, in test_format_function > "[0x0L 0x1L 0x2L]") > File "/usr/lib64/python3.2/site-packages/numpy/testing/utils.py", > line 313, in assert_equal > raise AssertionError(msg) > AssertionError: > Items are not equal: > ACTUAL: '[0x0 0x1 0x2]' > DESIRED: '[0x0L 0x1L 0x2L]' > > ====================================================================== > FAIL: test_datetime_as_string (test_datetime.TestDateTime) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/usr/lib64/python3.2/site-packages/numpy/core/tests/test_datetime.py", > line 1001, in test_datetime_as_string > '1959') > File "/usr/lib64/python3.2/site-packages/numpy/testing/utils.py", > line 313, in assert_equal > raise AssertionError(msg) > AssertionError: > Items are not equal: > ACTUAL: b'1959' > DESIRED: '1959' > > ---------------------------------------------------------------------- > Ran 3215 tests in 45.744s > > FAILED (KNOWNFAIL=4, SKIP=2, errors=2, failures=2) > <nose.result.TextTestResult run=3215 errors=2 failures=2> > _______________________________________________ > NumPy-Discussion mailing list > NumPy-Discussion@scipy.org > http://mail.scipy.org/mailman/listinfo/numpy-discussion >
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