Guys, any advice is highly appreciated. I am a little new to building in Linux. Thanks, Lahiru
On Sat, Oct 11, 2014 at 9:43 AM, Lahiru Samarakoon <lahir...@gmail.com> wrote: > I switched to numpy-1.8.2. . Now getting following error. I am using > LAPACK that comes with atlast installation. Can this be a problem? > > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > File > "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/__init__.py", > line 170, in <module> > from . import add_newdocs > File > "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/add_newdocs.py", > line 13, in <module> > from numpy.lib import add_newdoc > File > "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/lib/__init__.py", > line 18, in <module> > from .polynomial import * > File > "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/lib/polynomial.py", > line 19, in <module> > from numpy.linalg import eigvals, lstsq, inv > File > "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/__init__.py", > line 51, in <module> > from .linalg import * > File > "/home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/linalg.py", > line 29, in <module> > from numpy.linalg import lapack_lite, _umath_linalg > ImportError: > /home/svu/a0095654/.local/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so: > undefined symbol: zgesdd_ > > On Sat, Oct 11, 2014 at 1:30 AM, Julian Taylor < > jtaylor.deb...@googlemail.com> wrote: > >> On 10.10.2014 19:26, Lahiru Samarakoon wrote: >> > Red Hat Enterprise Linux release 5.8 >> > gcc (GCC) 4.1.2 >> > >> > I am also trying to install numpy 1.9. >> >> that is the broken platform, please try the master branch or the >> maintenance/1.9.x branch, those should work now. >> >> Are there volunteers to report this to redhat? >> >> > >> > On Sat, Oct 11, 2014 at 12:59 AM, Julian Taylor >> > <jtaylor.deb...@googlemail.com <mailto:jtaylor.deb...@googlemail.com>> >> > wrote: >> > >> > On 10.10.2014 18:51, Lahiru Samarakoon wrote: >> > > Dear all, >> > > >> > > I am trying to install numpy without root access. So I am >> building from >> > > the source. I have installed atlas which also has lapack with >> it. I >> > > changed the site.cfg file as given below >> > > >> > > [DEFAULT] >> > > library_dirs = /home/svu/a0095654/ATLAS/build/lib >> > > include_dirs = /home/svu/a0095654/ATLAS/build/include >> > > >> > > >> > > However, I am getting a segmentation fault when importing numpy. >> > > >> > > Please advise. I also put the build log file at the end of the >> email if >> > > necessary. >> > >> > >> > Which platform are you working on? Which compiler version? >> > We just solved a segfault on import on red hat 5 gcc 4.1.2. Very >> likely >> > caused by a compiler bug. See >> https://github.com/numpy/numpy/issues/5163 >> > >> > The build log is complaining about your atlas being to small, >> possibly >> > the installation is broken? >> > >> > >> >> >
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