Thanks, but I confirmed "git pull" showed my repository was up-to-date.


I seem to fix the problem now. The problem was numpy.

The command to install numpy on the wiki is:

$ sudo apt-get install numpy

But, there is no such a package.

So I had installed a similar one.

$ sudo apt-get install python-numpy

Then, I got the error complaining about Python.h.

After removing python-numpy, and installing with pip as follows,
the setup command finished without an error.

$ sudo pip install numpy


Is there any command to check if the installation was successful or not?

Thanks,
Takenori


On Wed, Aug 19, 2015 at 3:47 PM, Pascal Weinberger <
[email protected]> wrote:

> Hey!
>
> This may be because of some recent updates that also caused travis to
> fail,
> You may try to update your code by pulling from github and try again. It
> should be building now :)
> On Aug 19, 2015 6:20 AM, "Takenori Sato" <[email protected]> wrote:
>
>> HI,
>>
>> I followed "Installing NuPIC on Ubuntu",
>> but got stuck with some errors as follows.
>>
>> I would appreciate if anyone gives me some hints to fix this.
>>
>> ...
>> Could not locate executable gfortran
>> Could not locate executable f95
>> Could not locate executable ifort
>> Could not locate executable ifc
>> Could not locate executable lf95
>> Could not locate executable pgfortran
>> Could not locate executable f90
>> Could not locate executable f77
>> Could not locate executable fort
>> Could not locate executable efort
>> Could not locate executable efc
>> Could not locate executable g77
>> Could not locate executable g95
>> Could not locate executable pathf95
>> don't know how to compile Fortran code on platform 'posix'
>> _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
>> [enabled by default]
>>  int exp (void);
>>      ^
>> _configtest.o: In function `main':
>> /tmp/easy_install-uVwEo7/numpy-1.9.2/_configtest.c:6: undefined reference
>> to `exp'
>> collect2: error: ld returned 1 exit status
>> _configtest.o: In function `main':
>> /tmp/easy_install-uVwEo7/numpy-1.9.2/_configtest.c:6: undefined reference
>> to `exp'
>> collect2: error: ld returned 1 exit status
>> _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
>> [enabled by default]
>>  int exp (void);
>>      ^
>> _configtest.c:1:20: fatal error: Python.h: No such file or directory
>>  #include <Python.h>
>>                     ^
>> compilation terminated.
>> _configtest.c:1:20: fatal error: Python.h: No such file or directory
>>  #include <Python.h>
>>                     ^
>> compilation terminated.
>> Traceback (most recent call last):
>>   File "setup.py", line 430, in <module>
>>     """)
>>   File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
>>     dist.run_commands()
>>   File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
>>     self.run_command(cmd)
>>   File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
>>     cmd_obj.run()
>>   File "/usr/lib/python2.7/dist-packages/setuptools/command/install.py",
>> line 73, in run
>>     self.do_egg_install()
>>   File "/usr/lib/python2.7/dist-packages/setuptools/command/install.py",
>> line 96, in do_egg_install
>>     cmd.run()
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 381, in run
>>     self.easy_install(spec, not self.no_deps)
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 597, in easy_install
>>     return self.install_item(None, spec, tmpdir, deps, True)
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 648, in install_item
>>     self.process_distribution(spec, dist, deps)
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 694, in process_distribution
>>     [requirement], self.local_index, self.easy_install
>>   File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 620, in
>> resolve
>>     dist = best[req.key] = env.best_match(req, ws, installer)
>>   File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 858, in
>> best_match
>>     return self.obtain(req, installer) # try and download/install
>>   File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 870, in
>> obtain
>>     return installer(requirement)
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 616, in easy_install
>>     return self.install_item(spec, dist.location, tmpdir, deps)
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 646, in install_item
>>     dists = self.install_eggs(spec, download, tmpdir)
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 834, in install_eggs
>>     return self.build_and_install(setup_script, setup_base)
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 1040, in build_and_install
>>     self.run_setup(setup_script, setup_base, args)
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/easy_install.py", line
>> 1025, in run_setup
>>     run_setup(setup_script, args)
>>   File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 50,
>> in run_setup
>>     lambda: execfile(
>>   File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line
>> 100, in run
>>     return func()
>>   File "/usr/lib/python2.7/dist-packages/setuptools/sandbox.py", line 52,
>> in <lambda>
>>     {'__file__':setup_script, '__name__':'__main__'}
>>   File "setup.py", line 251, in <module>
>>     if name is None or options is None:
>>   File "setup.py", line 243, in setup_package
>>     return (
>>   File "/usr/lib/python2.7/dist-packages/numpy/distutils/core.py", line
>> 169, in setup
>>     return old_setup(**new_attr)
>>   File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
>>     dist.run_commands()
>>   File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
>>     self.run_command(cmd)
>>   File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
>>     cmd_obj.run()
>>   File
>> "/usr/lib/python2.7/dist-packages/setuptools/command/bdist_egg.py", line
>> 177, in run
>>     self.run_command("egg_info")
>>   File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
>>     self.distribution.run_command(command)
>>   File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
>>     cmd_obj.run()
>>   File
>> "/usr/lib/python2.7/dist-packages/numpy/distutils/command/egg_info.py",
>> line 10, in run
>>     self.run_command("build_src")
>>   File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
>>     self.distribution.run_command(command)
>>   File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
>>     cmd_obj.run()
>>   File
>> "/usr/lib/python2.7/dist-packages/numpy/distutils/command/build_src.py",
>> line 153, in run
>>     self.build_sources()
>>   File
>> "/usr/lib/python2.7/dist-packages/numpy/distutils/command/build_src.py",
>> line 170, in build_sources
>>     self.build_extension_sources(ext)
>>   File
>> "/usr/lib/python2.7/dist-packages/numpy/distutils/command/build_src.py",
>> line 329, in build_extension_sources
>>     sources = self.generate_sources(sources, ext)
>>   File
>> "/usr/lib/python2.7/dist-packages/numpy/distutils/command/build_src.py",
>> line 386, in generate_sources
>>     source = func(extension, build_dir)
>>   File "numpy/core/setup.py", line 432, in generate_config_h
>>     if haveBuild:
>>   File "numpy/core/setup.py", line 42, in check_types
>>     except urllib2.URLError:
>>   File "numpy/core/setup.py", line 293, in check_types
>>     else:
>> SystemError: Cannot compile 'Python.h'. Perhaps you need to install
>> python-dev|python-devel.
>>
>>
>> I followed the wiki, so python-dev had been installed.
>>
>> $ sudo apt-get install python-dev
>> Reading package lists... Done
>> Building dependency tree
>> Reading state information... Done
>> python-dev is already the newest version.
>> 0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
>>
>> Also, this is a freshly installed machine for NuPIC.
>>
>> $ lsb_release -a
>> No LSB modules are available.
>> Distributor ID:    Ubuntu
>> Description:    Ubuntu 14.04.3 LTS
>> Release:    14.04
>> Codename:    trusty
>>
>> Thanks,
>> Takenori
>>
>

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