John,
I'm not sure if I understand you correct.I need a lib/tool that can tell me physical location of a particular html element as the page would have been displayed by a browser.
With NekoHTML you can handle a html page as XML Document, so you should be able to scan the document for any tag you wish.
Alternatively you can may will find javax.swing.text.html.* useful.
Take a look http://jmvidal.cse.sc.edu/csce790/PS1/Browser.java.html.
I'm not sure if this will helps you, may you wish can specify you question.
Stefan
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