Hi

Sorry about the late reply

lør, 18 04 2009 kl. 20:02 +0200, skrev Martin Grocholeske:
> > To which package do you plan on
> > adding your functions?
> >   
> Communication package

I guess I should learn to read the subject of e-mails :-)

> > To keep the number of inactive developers down we have a policy that new
> > developers should post code on the list before they are given access to
> > SVN. Could you post you code once you're ready? Perhaps somebody can
> > even help with the speed issues :-)
> >   
> Sure. I attached the code. I didn't do it because it isn't publishable 
> code now and some comments would be nice (I will not commit the attached 
> code as it is!). 

Thanks. I'm not confident enough to actually comment on the algorithms.
I can, however, mention that you should remember to add a license to
your files :-)

> I'm not so confident regarding the speed issues. I 
> vectorized the main bottleneck, but the problem is, that you have two 
> different task, if you uses a Viterbi algorithm.

I believe we have an implementation of the Viterbi algorithm in the
'statistics' package. Perhaps this could be the source of some
inspiration?

> If you write C functions, it can be much faster, because you lost the 
> interpreting overhead. I'm sure this is the way to do. But the fist step 
> should be working scripts, that will be used as reference for C 
> implementation later.

I agree with this logic. Get functionality right first, then we can
optimise if necessary.

Søren


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