2009/11/18 Craig A. James <cja...@emolecules.com>: > Tim, > > I've run into a problem: OpenBabel add a hydrogen to any potentially-chiral > carbon that doesn't have four bonds, for example, when it parses "ClC(Br)I" > (but not "ClC(Cl)Br" since it can't be chiral). I'm pretty sure it's the new > stereo code that's doing this, but I haven't dug into it yet.
I don't think this is right: >>> mol = pybel.readstring("smi", "ClC(Br)I") >>> mol.OBMol.NumAtoms() 4 No hydrogen present. ?? Do I misunderstand? > Thanks, > Craig > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > OpenBabel-Devel mailing list > OpenBabel-Devel@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-devel > ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ OpenBabel-Devel mailing list OpenBabel-Devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-devel