Bugs item #3092368, was opened at 2010-10-21 21:02
Message generated for change (Tracker Item Submitted) made by baoilleach
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Category: File Translation
Group: 2.3.x
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Noel O'Boyle (baoilleach)
Assigned to: Nobody/Anonymous (nobody)
Summary: Roundtripping COO- through MOL2 converts to diol

Initial Comment:
Test case
>obabel -:"CCCC(=O)(O)" -omol2 | obabel -imol2 -osmi
CCCC(O)O        *****

The problem is that the two 'aromatic' bonds to the oxygens are not interpreted 
correctly on reading. Given that CCCC(=O)[O-] gives exactly the same MOL2 file 
(according to Open Babel), it may be incorrect to have the bonds 'ar' in the 
first place for the COOH case.

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