Hello, I think I have located and fixed the problem described in: http://sourceforge.net/tracker/?func=detail&aid=3203039&group_id=40728&atid=428740
I have just tested it with a few cases and I wonder if someone would like to have a look at it before I commit it since I do not want to break other things. The patch is just: Index: data.cpp =================================================================== --- data.cpp (revision 4408) +++ data.cpp (working copy) @@ -759,7 +759,6 @@ // Leave the protonation/deprotonation to phmodel.txt a1->SetType("O3"); a1->SetHyb(3); - a1->SetFormalCharge(0); } continue; } Or should these things be caught by the unit tests? Thanks. /Magnus ------------------------------------------------------------------------------ Colocation vs. Managed Hosting A question and answer guide to determining the best fit for your organization - today and in the future. http://p.sf.net/sfu/internap-sfd2d _______________________________________________ OpenBabel-Devel mailing list OpenBabel-Devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-devel