Hi list,

We're in the process of developing Avogadro 2, and I'm currently adding an
interface to perform the obabel minimize operation on a molecule.

My question: Is there a heuristic that can be used to select the "best"
forcefield for a given molecule? As I understand it:

* Ghemical is good for pure organics, say only C, H, O, N, S
* MMFF94 is good for dynamics
* UFF is good for non-organics

This is mostly inline with the documentation on the avogadro wiki:

http://avogadro.openmolecules.net/wiki/Tutorials:Force_fields

My big questions are:

* Are there cases where MMFF94s should be preferred to Ghemical?
* Is GAFF particularly good at any systems that the others handle poorly?

Comments, corrections, suggestions are welcome!

Thanks,
Dave
------------------------------------------------------------------------------
Everyone hates slow websites. So do we.
Make your web apps faster with AppDynamics
Download AppDynamics Lite for free today:
http://p.sf.net/sfu/appdyn_d2d_jan
_______________________________________________
OpenBabel-Devel mailing list
OpenBabel-Devel@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-devel

Reply via email to