See http://baoilleach.blogspot.co.uk/2010/04/plug-cclib-into-avogadro.html

On 12 February 2013 16:26, David Lonie <david.lo...@kitware.com> wrote:
> Hi list,
>
> Is there a way to perceive bonds in a collection of atoms with obabel? I
> looked though the documentation, but don't see an explicit operation for
> this.
>
> We thought maybe converting cml --> cml might trigger bond perception, but
> this doesn't seem to work either. Are there any tricks/operations that we
> might be able to use for this?
>
> Thanks,
> Dave
>
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